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Transat—A Method for Detecting the Conserved Helices of Functional RNA Structures, Including Transient, Pseudo-Knotted and Alternative Structures

Figure 6

Performance of Transat for predicting the known helices of the artificial data set for different total tree lengths.

The top left figures shows the sensitivity (Sens) as function of the false positive rate (FPR) for different tree lengths. The colors indicate the total length of the maximum-likelihood trees that were derived for the alignments of the artificial data set. They range from 0.5 to 16. The top right figures shows the sensitivity as function of the positive predictive value (PPV). The bottom left figures shows the F-measure and the bottom right figure the MCC as function of the p-value threshold, see the text for the definitions of the F-measure and the MCC. All figures use the same coloring scheme as the top left figure.

Figure 6

doi: https://doi.org/10.1371/journal.pcbi.1000823.g006