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Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag

Figure 11

Power to detect both HLA-codon and codon-codon associations (A) or just HLA-codon associations (B) in the mixed-clade cohort at 80% precision.

The “PLC Half” curve plots the power of on synthetic data generated using only associations that were identified from a cohort one half the size of the full cohort. The curves show how power is affected by the strengths of the planted associations.

Figure 11