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Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag

Figure 7

Noisy Add represents real data better than Decision Tree.

Synthetic data were generated according to the Decision Tree model fit to real data (A) and the Noisy Add model fit to real data (B). On both datasets, the Noisy Add model performs at least as well as the Decision Tree model. In contrast, the Decision Tree model does poorly when applied to data generated from the Noisy Add model.

Figure 7