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SimulFold: Simultaneously Inferring RNA Structures Including Pseudoknots, Alignments, and Trees Using a Bayesian MCMC Framework

Figure 2

Sampling of Tree Topologies

The topology of the tree on the left gets modified into the tree on the right by swapping an aunt (A) and its niece (B). Nice‚Äďaunt swapping has been shown to be ergodic.

Figure 2