Integrating multiple spatial transcriptomics data using community-enhanced graph contrastive learning
Fig 4
The performance of Tacos on datasets of mouse embryo from seqFISH and Stereo-seq.
(A) Spatial visualization of mouse embryo from seqFISH and Stereo-seq with the annotated label. (B) UMAP visualization of aligned embeddings obtained by Scanpy, Harmony, SLAT, STAligner, SPIRAL and Tacos. (C) Bar plots of the metric scores of these methods in aligning mouse embryo slices. (D) UMAP visualization of aligned slices. Spots with the same labels are colored by different colors, while spots with different labels are colored as grey. (E) Sankey plot of connection between seqFISH and Stereo-seq on low embedding of Tacos.