Catalyst: Fast and flexible modeling of reaction networks
Fig 5
A wide range of features are available for Catalyst model analysis.
A CRN model can be created either through the DSL, by manually declaring the reaction events, or by loading it from a file. The model is stored in the ReactionSystem IR, which can be used as input to a wide range of methods. Purple boxes indicate code written by the user, and green boxes the corresponding output. For some methods, either one, or both, boxes are omitted.