Robust inference of population size histories from genomic sequencing data

doi:10.1371/journal.pcbi.1010419

Robust inference of population size histories from genomic sequencing data

Fig 2

Schematic of our CHMM for a sample of size 4.

Information about the underlying tree at each locus is captured by the state s_i. is the set of intervals into which the respective summary of the tree (T_MRCA or ) can fall. The states change from each locus to the next in accordance with the transition matrix A and the observed number of derived alleles at each locus is emitted in accordance with the emission probabilities B.

doi: https://doi.org/10.1371/journal.pcbi.1010419.g002