Base-resolution prediction of transcription factor binding signals by a deep learning framework
Fig 2
Performance comparison of FCNsignal and the competing methods on the 53 ChIP-seq datasets.
(A) The MSE and Pearsonr values for BPNet, FCNA, and FCNsignal, and the Wilson’s test p-values (paired) of the two metrics between FCNsignal and the other two methods. (B) The AUC and PRAUC values for BPNet, DanQ, DeepCNN, FCNA, FCNsignal, and LSGKM, and the Wilson’s test p-values (paired) of the two metrics between FCNsignal and the other five methods. The red triangles represent the average values.