Reconstructing contact network structure and cross-immunity patterns from multiple infection histories
Fig 7
Effect of cross-immunity patterns on the average frequency of all possible sequence motifs with length one.
The motifs represent cross-sectional multiple infection snapshots. Here, samplings are performed at five random time points during the simulation. Note that coinfection by all 4 genotypes is only found in the homologous decreasing case. The corresponding cross-immunity matrices are shown in the Materials and methods. See also Fig 6 for additional information regarding co-occurrence between the genotypes.