Enhancing breakpoint resolution with deep segmentation model: A general refinement method for read-depth based structural variant callers
Table 5
Cross-sample enhancement on the real data.
Deep segmentation models were trained on NA12878, and enhancements using different models were applied for NA19238 and NA19239. “GS-ov SVs” is referred to as gold-standard overlapping SVs. “l/r match” represents SVs with partial-boundary-match (left or right), and “l&r match” represents SVs with both-boundary-match (left and right).