AlbaTraDIS: Comparative analysis of large datasets from parallel transposon mutagenesis experiments
Fig 2
A) The top four lines are the insertion sites in controls and under treatment conditions, where red lines are insertions in the forward direction and blue lines are insertions in the reverse direction, with the height corresponding to the number mapped reads identified for this site. The next three lines correspond to the signal identified by AlbaTraDIS using a sliding window of 50 bases and an interval of 25 bases, with the height corresponding to the log fold change between the treatments and controls. The bottom section shows the genes as found in the reference genome, with the forward reading frames of translation. B) The pattern of insertions around a gene that imply transcriptional augmentation, in the forward or reverse complementary direction. The shape of the gene indicates the direction, with the 5’ at the beginning (flat end) and the 3’ prime at the pointed end. Insertions on the forward strand are above the line and insertions on the reverse strand are below the line.