Revisiting the “satisfaction of spatial restraints” approach of MODELLER for protein homology modeling
Fig 6
Average quality scores of the models of the analysis set as a function of the wSP with which the DOPE potential has been included in the objective function of MODELLER.
(A) to (C) Quality scores of the AS models. (D) to (F) Quality scores of the AM models. (A) through (F) The horizontal dashed lines correspond to the scores obtained when modeling with MODELLER-generated (blue color) or optimal (orange) HDDRs without the use of DOPE.