Bayesian inference of phylogenetic networks from bi-allelic genetic markers
Fig 17
The ratio of trees (blue) and 1-reticulation networks (green) sampled under different simulation settings and violation in the different assumptions.
The true number of reticulations is 1. In each panel at most one condition is violated. (a) Mean of 1.0 is used for the Poisson prior on the number of reticulations. (b) Mean of 3.0 is used for the Poisson prior on the number of reticulations. (c) Linked loci: 10 sites are generated per gene tree. (d) Linked loci: 100 sites are generated per gene tree. (e) Rate variation across lineages with 0.1 of invariable sites and 3.0 as shape of gamma rate heterogeneity. (f) Rate variation across lineages with 0.2 of invariable sites and 5.0 as shape of gamma rate heterogeneity. (g) Rate variation across markers with 0.1 of invariable sites and 3.0 as shape of gamma rate heterogeneity. (h) Rate variation across markers with 0.2 of invariable sites and 5.0 as shape of gamma rate heterogeneity.