Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets
Fig 2
Dendrogram showing the hierarchical clustering of all pairwise weighted Robinson-Foulds distances using the Ward method [57].
Four main clusters are found, each one representing one of the four peptidome subsets. The proteome-based GBDP tree that was used as a baseline reference has the smallest distance to the [cytoPI60-more]-based trees and is thus closely positioned to that subgroup. The phylogenetic reconstruction methods FastME, ML, MP and MB are given in parentheses.