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Open Access
Peer-reviewed
Research Article
FiCoS: A fine-grained and coarse-grained GPU-powered deterministic simulator for biochemical networks
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Andrea Tangherloni ,
Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing
* E-mail: andrea.tangherloni@unibg.it (AT); daniela.besozzi@unimib.it (DB)
Affiliation Department of Human and Social Sciences, University of Bergamo, Bergamo, Italy
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Marco S. Nobile,
Roles Conceptualization, Data curation, Formal analysis, Investigation, Validation, Visualization, Writing – original draft, Writing – review & editing
Affiliations Department of Industrial Engineering & Innovation Sciences, Eindhoven University of Technology, Eindhoven, The Netherlands, SYSBIO/ISBE.IT Centre of Systems Biology, Milan, Italy, Bicocca Bioinformatics Biostatistics and Bioimaging Centre (B4), University of Milano-Bicocca, Vedano al Lambro, Italy
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Paolo Cazzaniga,
Roles Conceptualization, Formal analysis, Investigation, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing
Affiliations Department of Human and Social Sciences, University of Bergamo, Bergamo, Italy, SYSBIO/ISBE.IT Centre of Systems Biology, Milan, Italy, Bicocca Bioinformatics Biostatistics and Bioimaging Centre (B4), University of Milano-Bicocca, Vedano al Lambro, Italy
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Giulia Capitoli,
Roles Formal analysis, Methodology, Validation, Writing – review & editing
Affiliations Bicocca Bioinformatics Biostatistics and Bioimaging Centre (B4), University of Milano-Bicocca, Vedano al Lambro, Italy, School of Medicine and Surgery, University of Milano-Bicocca, Monza, Italy
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Simone Spolaor,
Roles Formal analysis, Writing – review & editing
Affiliations Bicocca Bioinformatics Biostatistics and Bioimaging Centre (B4), University of Milano-Bicocca, Vedano al Lambro, Italy, Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy
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Leonardo Rundo,
Roles Formal analysis, Validation, Visualization, Writing – review & editing
Affiliations Department of Radiology, University of Cambridge, Cambridge, United Kingdom, Cancer Research UK Cambridge Centre, University of Cambridge, Cambridge, United Kingdom
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Giancarlo Mauri,
Roles Formal analysis, Funding acquisition, Resources, Writing – review & editing
Affiliations SYSBIO/ISBE.IT Centre of Systems Biology, Milan, Italy, Bicocca Bioinformatics Biostatistics and Bioimaging Centre (B4), University of Milano-Bicocca, Vedano al Lambro, Italy, Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy
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Daniela Besozzi
Roles Formal analysis, Funding acquisition, Methodology, Project administration, Resources, Supervision, Validation, Writing – review & editing
* E-mail: andrea.tangherloni@unibg.it (AT); daniela.besozzi@unimib.it (DB)
Affiliations SYSBIO/ISBE.IT Centre of Systems Biology, Milan, Italy, Bicocca Bioinformatics Biostatistics and Bioimaging Centre (B4), University of Milano-Bicocca, Vedano al Lambro, Italy, Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy
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FiCoS: A fine-grained and coarse-grained GPU-powered deterministic simulator for biochemical networks
- Andrea Tangherloni,
- Marco S. Nobile,
- Paolo Cazzaniga,
- Giulia Capitoli,
- Simone Spolaor,
- Leonardo Rundo,
- Giancarlo Mauri,
- Daniela Besozzi
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- Published: September 9, 2021
- https://doi.org/10.1371/journal.pcbi.1009410