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Open Access
Peer-reviewed
Research Article
Detection of gene cis-regulatory element perturbations in single-cell transcriptomes
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Grace Hui Ting Yeo,
Roles Conceptualization, Formal analysis, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing
Affiliations Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America, Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
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Oscar Juez,
Roles Formal analysis, Investigation, Methodology, Validation
Affiliation Division of Genetics, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston, Massachusetts, United States of America
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Qing Chen,
Roles Formal analysis, Investigation, Methodology, Validation
Affiliation Division of Genetics, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston, Massachusetts, United States of America
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Budhaditya Banerjee,
Roles Formal analysis, Investigation, Methodology, Validation
Affiliation Division of Genetics, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston, Massachusetts, United States of America
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Lendy Chu,
Roles Formal analysis, Investigation, Methodology, Validation
Affiliation Division of Genetics, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston, Massachusetts, United States of America
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Max W. Shen,
Roles Formal analysis
Affiliations Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America, Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
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May Sabry,
Roles Formal analysis, Investigation, Methodology, Validation
Affiliation Hubrecht Institute, Utrecht, the Netherlands
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Ive Logister,
Roles Formal analysis, Investigation, Methodology, Validation
Affiliation Hubrecht Institute, Utrecht, the Netherlands
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Richard I. Sherwood ,
Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing
* E-mail: rsherwood@rics.bwh.harvard.edu (RIS); gifford@mit.edu (DKG)
Affiliations Division of Genetics, Department of Medicine, Brigham and Women’s Hospital and Harvard Medical School, Boston, Massachusetts, United States of America, Hubrecht Institute, Utrecht, the Netherlands
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David K. Gifford
Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing
* E-mail: rsherwood@rics.bwh.harvard.edu (RIS); gifford@mit.edu (DKG)
Affiliation Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
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Detection of gene cis-regulatory element perturbations in single-cell transcriptomes
- Grace Hui Ting Yeo,
- Oscar Juez,
- Qing Chen,
- Budhaditya Banerjee,
- Lendy Chu,
- Max W. Shen,
- May Sabry,
- Ive Logister,
- Richard I. Sherwood,
- David K. Gifford
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- Published: March 12, 2021
- https://doi.org/10.1371/journal.pcbi.1008789