Practical considerations for measuring the effective reproductive number, R_t

• Katelyn M. Gostic ,

  * E-mail: kgostic@uchicago.edu

  Affiliation Department of Ecology and Evolution, University of Chicago, Chicago, IL, United States of America

  https://orcid.org/0000-0002-9369-6371

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• Lauren McGough,

  Affiliation Department of Ecology and Evolution, University of Chicago, Chicago, IL, United States of America

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• Edward B. Baskerville,

  Affiliation Department of Ecology and Evolution, University of Chicago, Chicago, IL, United States of America

  https://orcid.org/0000-0003-4124-6472

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• Sam Abbott,

  Affiliation Centre for Mathematical Modelling of Infectious Diseases, Department of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, United Kingdom

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• Keya Joshi,

  Affiliation Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA, United States of America

  https://orcid.org/0000-0003-0244-0459

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• Christine Tedijanto,

  Affiliation Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA, United States of America

  https://orcid.org/0000-0003-3403-5765

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• Rebecca Kahn,

  Affiliation Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA, United States of America

  https://orcid.org/0000-0001-9511-6142

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• Rene Niehus,

  Affiliation Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA, United States of America

  https://orcid.org/0000-0002-6751-4124

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• James A. Hay,

  Affiliation Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA, United States of America

  https://orcid.org/0000-0002-1998-1844

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• Pablo M. De Salazar,

  Affiliation Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA, United States of America

  https://orcid.org/0000-0002-8096-2001

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• Joel Hellewell,

  Affiliation Centre for Mathematical Modelling of Infectious Diseases, Department of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, United Kingdom

  https://orcid.org/0000-0003-2683-0849

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• Sophie Meakin,

  Affiliation Centre for Mathematical Modelling of Infectious Diseases, Department of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, United Kingdom

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• James D. Munday,

  Affiliation Centre for Mathematical Modelling of Infectious Diseases, Department of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, United Kingdom

  https://orcid.org/0000-0002-6206-7134

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• Nikos I. Bosse,

  Affiliation Centre for Mathematical Modelling of Infectious Diseases, Department of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, United Kingdom

  https://orcid.org/0000-0002-7750-5280

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• Katharine Sherrat,

  Affiliation Centre for Mathematical Modelling of Infectious Diseases, Department of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, United Kingdom

  https://orcid.org/0000-0003-2049-3423

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• Robin N. Thompson,

  Affiliations Centre for Mathematical Modelling of Infectious Diseases, Department of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, United Kingdom, Mathematical Institute, University of Oxford, Oxford, United Kingdom

  https://orcid.org/0000-0001-8545-5212

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• Laura F. White,

  Affiliation Department of Biostatistics, Boston University School of Public Health, Boston, MA, United States of America

  https://orcid.org/0000-0002-0588-8235

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• Jana S. Huisman,

  Affiliations Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland, Department of Biosystems Science and Engineering, ETH Zürich, Switzerland

  https://orcid.org/0000-0002-1782-8109

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• Jérémie Scire,

  Affiliations Department of Biosystems Science and Engineering, ETH Zürich, Switzerland, Swiss Institute of Bioinformatics, Basel, Switzerland

  https://orcid.org/0000-0003-0059-645X

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• Sebastian Bonhoeffer,

  Affiliation Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland

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• Tanja Stadler,

  Affiliations Department of Biosystems Science and Engineering, ETH Zürich, Switzerland, Swiss Institute of Bioinformatics, Basel, Switzerland

  https://orcid.org/0000-0001-6431-535X

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• Jacco Wallinga,

  Affiliations Centre for Infectious Disease Control, National Institute for Public Health and the Environment, Bilthoven, the Netherlands, Department of Biomedical Data Sciences, Leiden University Medical Centre, Leiden, the Netherlands

  https://orcid.org/0000-0003-1725-5627

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• Sebastian Funk,

  Affiliation Centre for Mathematical Modelling of Infectious Diseases, Department of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, United Kingdom

  https://orcid.org/0000-0002-2842-3406

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• Marc Lipsitch,

  Affiliation Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Harvard University, Boston, MA, United States of America

  https://orcid.org/0000-0003-1504-9213

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•  [ ... ],
• Sarah Cobey

  Affiliation Department of Ecology and Evolution, University of Chicago, Chicago, IL, United States of America

  https://orcid.org/0000-0001-5298-8979

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