Community-based benchmarking improves spike rate inference from two-photon calcium imaging data

• Philipp Berens ,

  Roles Conceptualization, Formal analysis, Supervision, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: philipp.berens@uni-tuebingen.de

  Affiliations Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany, Center for Integrative Neuroscience, University of Tübingen, Tübingen, Germany, Bernstein Center for Computational Neuroscience, University of Tübingen, Tübingen, Germany

  http://orcid.org/0000-0002-0199-4727

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• Jeremy Freeman,

  Roles Conceptualization, Resources, Software

  Affiliations Chan Zuckerberg Initiative, San Francisco, California, United States of America, Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, United States of America

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• Thomas Deneux,

  Roles Software, Writing – review & editing

  Affiliation Unit of Neuroscience Information and Complexity, Centre National de la Recherche Scientifique, Gif-sur-Yvette, France

  http://orcid.org/0000-0002-9330-7655

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• Nikolay Chenkov,

  Roles Software

  Affiliation Bernstein Center for Computational Neuroscience and Institute for Theoretical Biology, Humboldt-Universität zu Berlin, Berlin, Germany

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• Thomas McColgan,

  Roles Software

  Affiliation Bernstein Center for Computational Neuroscience and Institute for Theoretical Biology, Humboldt-Universität zu Berlin, Berlin, Germany

  http://orcid.org/0000-0003-0027-0580

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• Artur Speiser,

  Roles Software

  Affiliation Research Center Caesar, an associate of the Max Planck Society, Bonn, Germany

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• Jakob H. Macke,

  Roles Software, Supervision, Writing – review & editing

  Affiliations Research Center Caesar, an associate of the Max Planck Society, Bonn, Germany, Department of Electrical and Computer Engineering, Technical University of Munich, Munich, Germany

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• Srinivas C. Turaga,

  Roles Software, Supervision

  Affiliation Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, United States of America

  http://orcid.org/0000-0003-3247-6487

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• Patrick Mineault,

  Roles Software

  Affiliation Independent Researcher, San Francisco, California, United States of America

  http://orcid.org/0000-0001-5519-842X

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• Peter Rupprecht,

  Roles Software, Writing – review & editing

  Affiliations Friedrich Miescher Institute of Biomedical Research, Basel, Switzerland, University of Basel, Basel, Switzerland

  http://orcid.org/0000-0001-8235-8257

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• Stephan Gerhard,

  Roles Software

  Affiliation Friedrich Miescher Institute of Biomedical Research, Basel, Switzerland

  http://orcid.org/0000-0003-4454-6171

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• Rainer W. Friedrich,

  Roles Supervision, Writing – review & editing

  Affiliations Friedrich Miescher Institute of Biomedical Research, Basel, Switzerland, University of Basel, Basel, Switzerland

  http://orcid.org/0000-0002-8803-2976

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• Johannes Friedrich,

  Roles Software

  Affiliation Departments of Statistics and Neuroscience, Grossman Center for the Statistics of Mind, and Center for Theoretical Neuroscience, Columbia University, New York, New York, United States of America

  http://orcid.org/0000-0002-1321-5866

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• Liam Paninski,

  Roles Software, Supervision, Writing – review & editing

  Affiliation Departments of Statistics and Neuroscience, Grossman Center for the Statistics of Mind, and Center for Theoretical Neuroscience, Columbia University, New York, New York, United States of America

  ⨯
• Marius Pachitariu,

  Roles Software

  Affiliations Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, United States of America, Institute of Neurology, University College, London, United Kingdom

  http://orcid.org/0000-0001-7106-814X

  ⨯
• Kenneth D. Harris,

  Roles Software, Supervision

  Affiliation Institute of Neurology, University College, London, United Kingdom

  http://orcid.org/0000-0002-4922-3972

  ⨯
• Ben Bolte,

  Roles Software

  Affiliation Departments of Mathematics and Computer Science, Emory University, Atlanta, United States of America

  ⨯
• Timothy A. Machado,

  Roles Software

  Affiliation Departments of Statistics and Neuroscience, Grossman Center for the Statistics of Mind, and Center for Theoretical Neuroscience, Columbia University, New York, New York, United States of America

  ⨯
• Dario Ringach,

  Roles Software

  Affiliation Neurobiology and Psychology, Jules Stein Eye Institute, Biomedical Engineering Program, David Geffen School of Medicine, University of California, Los Angeles, California, United States of America

  ⨯
• Jasmine Stone,

  Roles Resources, Software

  Affiliations Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, United States of America, Departement of Computer Science, Yale University, New Haven, Connecticut, United States of America

  http://orcid.org/0000-0003-0690-0141

  ⨯
• Luke E. Rogerson,

  Roles Data curation, Formal analysis

  Affiliations Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany, Center for Integrative Neuroscience, University of Tübingen, Tübingen, Germany, Bernstein Center for Computational Neuroscience, University of Tübingen, Tübingen, Germany

  ⨯
• Nicolas J. Sofroniew,

  Roles Resources, Software

  Affiliation Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, United States of America

  ⨯
• Jacob Reimer,

  Roles Data curation

  Affiliations Department of Neuroscience, Baylor College of Medicine, Houston, Texas, United States of America, Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, Texas, United States of America

  ⨯
• Emmanouil Froudarakis,

  Roles Data curation

  Affiliations Department of Neuroscience, Baylor College of Medicine, Houston, Texas, United States of America, Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, Texas, United States of America

  http://orcid.org/0000-0002-3249-3845

  ⨯
• Thomas Euler,

  Roles Conceptualization, Supervision

  Affiliations Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany, Center for Integrative Neuroscience, University of Tübingen, Tübingen, Germany, Bernstein Center for Computational Neuroscience, University of Tübingen, Tübingen, Germany

  http://orcid.org/0000-0002-4567-6966

  ⨯
• Miroslav Román Rosón,

  Roles Data curation

  Affiliations Institute for Ophthalmic Research, University of Tübingen, Tübingen, Germany, Center for Integrative Neuroscience, University of Tübingen, Tübingen, Germany, Division of Neurobiology, Department Biology II, LMU Munich, Munich, Germany

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• Lucas Theis,

  Roles Conceptualization, Data curation, Software

  Affiliation Twitter, London, United Kingdom

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• Andreas S. Tolias,

  Roles Conceptualization, Supervision

  Affiliations Department of Neuroscience, Baylor College of Medicine, Houston, Texas, United States of America, Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, Texas, United States of America, Department of Electrical and Computer Engineering, Rice University, Houston, Texas, United States of America

  http://orcid.org/0000-0002-4305-6376

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•  [ ... ],
• Matthias Bethge

  Roles Conceptualization, Supervision, Writing – review & editing

  Affiliations Center for Integrative Neuroscience, University of Tübingen, Tübingen, Germany, Bernstein Center for Computational Neuroscience, University of Tübingen, Tübingen, Germany, Center for Neuroscience and Artificial Intelligence, Baylor College of Medicine, Houston, Texas, United States of America, Institute of Theoretical Physics, University of Tübingen, Tübingen, Germany

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