HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS Data

Open Access

Peer-reviewed

Research Article

Emily Berger,

Affiliations Department of Mathematics, MIT, Cambridge, Massachusetts, United States of America, Computer Science and Artificial Intelligence Laboratory, MIT, Cambridge, Massachusetts, United States of America, Department of Mathematics, UC Berkeley, Berkeley, California, United States of America
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Deniz Yorukoglu ,

* E-mail: denizy@mit.edu (DY); bab@csail.mit.edu (BB)

Affiliation Computer Science and Artificial Intelligence Laboratory, MIT, Cambridge, Massachusetts, United States of America
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Jian Peng,

Affiliations Department of Mathematics, MIT, Cambridge, Massachusetts, United States of America, Computer Science and Artificial Intelligence Laboratory, MIT, Cambridge, Massachusetts, United States of America
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Bonnie Berger

* E-mail: denizy@mit.edu (DY); bab@csail.mit.edu (BB)

Affiliations Department of Mathematics, MIT, Cambridge, Massachusetts, United States of America, Computer Science and Artificial Intelligence Laboratory, MIT, Cambridge, Massachusetts, United States of America
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Single nucleotide polymorphisms
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Haplotypes
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Genomics
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Polyploidy
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Variant genotypes
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Fish genomics
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Permutation
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Ploidy
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