Query-Dependent Banding (QDB) for Faster RNA Similarity Searches

Open Access

Peer-reviewed

Research Article

Eric P Nawrocki,

Affiliation Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia, United States of America
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Sean R Eddy

*To whom correspondence should be addressed. E-mail: eddys@janelia.hhmi.org

Affiliation Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia, United States of America
⨯

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Sequence alignment
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RNA alignment
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Database searching
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RNA structure
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Sequence similarity searching
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Algorithms
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Multiple alignment calculation
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Entropy
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