Decoding the language of microbiomes using word-embedding techniques, and applications in inflammatory bowel disease

Christine A. Tataru; Maude M. David

doi:10.1371/journal.pcbi.1007859

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Open Access

Peer-reviewed

Research Article

Decoding the language of microbiomes using word-embedding techniques, and applications in inflammatory bowel disease

Christine A. Tataru ,

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: tataruc@oregonstate.edu (CAT); maude.david@oregonstate.edu (MMD)

Affiliation Department of Microbiology, Oregon State University, Corvallis, Oregon, United States of America

http://orcid.org/0000-0002-3869-2079

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Maude M. David

Roles Funding acquisition, Investigation, Methodology, Supervision, Writing – review & editing

* E-mail: tataruc@oregonstate.edu (CAT); maude.david@oregonstate.edu (MMD)

Affiliations Department of Microbiology, Oregon State University, Corvallis, Oregon, United States of America, Department of Pharmaceutical Sciences, Oregon State University, Corvallis, Oregon, United States of America

http://orcid.org/0000-0003-1561-418X

⨯

Decoding the language of microbiomes using word-embedding techniques, and applications in inflammatory bowel disease

Christine A. Tataru,
Maude M. David

Published: May 4, 2020
https://doi.org/10.1371/journal.pcbi.1007859

About the Authors

Christine A. Tataru

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: tataruc@oregonstate.edu (CAT); maude.david@oregonstate.edu (MMD)

Affiliation Department of Microbiology, Oregon State University, Corvallis, Oregon, United States of America

http://orcid.org/0000-0002-3869-2079

Maude M. David

Roles Funding acquisition, Investigation, Methodology, Supervision, Writing – review & editing

* E-mail: tataruc@oregonstate.edu (CAT); maude.david@oregonstate.edu (MMD)

Affiliations Department of Microbiology, Oregon State University, Corvallis, Oregon, United States of America, Department of Pharmaceutical Sciences, Oregon State University, Corvallis, Oregon, United States of America

http://orcid.org/0000-0003-1561-418X

Competing Interests

The authors have declared that no competing interests exist.

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Metabolic pathways
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Microbiome
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Phylogenetics
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Phylogenetic analysis
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Forecasting
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Inflammatory bowel disease
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Biosynthesis
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Trees
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