About the Authors

Esa Pitkänen

esa.pitkanen@helsinki.fi

Affiliations Department of Computer Science, University of Helsinki, Helsinki, Finland, Department of Medical Genetics, Genome-Scale Biology Research Program, University of Helsinki, Helsinki, Finland

Paula Jouhten

Affiliation VTT Technical Research Centre of Finland, Espoo, Finland

Jian Hou

Affiliations Department of Computer Science, University of Helsinki, Helsinki, Finland, Department of Information and Computer Science, Aalto University, Espoo, Finland

Muhammad Fahad Syed

Affiliation VTT Technical Research Centre of Finland, Espoo, Finland

Peter Blomberg

Affiliation VTT Technical Research Centre of Finland, Espoo, Finland

Jana Kludas

Affiliation Department of Information and Computer Science, Aalto University, Espoo, Finland

Merja Oja

Affiliation VTT Technical Research Centre of Finland, Espoo, Finland

Liisa Holm

Affiliation Institute of Biotechnology & Department of Biosciences, University of Helsinki, Helsinki, Finland

Merja Penttilä

Affiliation VTT Technical Research Centre of Finland, Espoo, Finland

Juho Rousu

Affiliation Department of Information and Computer Science, Aalto University, Espoo, Finland

Mikko Arvas

Affiliation VTT Technical Research Centre of Finland, Espoo, Finland

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: EP JR MA. Performed the experiments: EP PJ JH MA. Analyzed the data: EP PJ JH JR MA. Wrote the paper: EP PJ JH MFS PB JK MO LH MP JR MA. Conceived the original method idea: EP JR. Implemented the method: EP JH MFS JK MO. Manual model curation, biomass and media definitions: EP PJ. Reaction direction constraints: EP PJ PB.