Birds, blooms, and evolving diversity

In this Open Highlight, Senior Editor Lauren Richardson features exciting new Open Access research into how species evolve their characteristic traits.

occurs between this new species and its relatives, the new species is thus sufficiently distinct in its signals to avoid social competition. Birds, with their showy mating routines and songs, are a popular subject for trait evolution studies. One of the foremost goals of research into trait radiation is identifying the genetic differences that lead to specific phenotypes. In this Science Advances article, the authors compare the genomes of nine species of birds (capuchino seedeaters) that live in overlapping regions of South American grassland [2]. Their genomes were highly similar, yet the authors found divergent areas, many of which contained genes involved in pigmentation, explaining their varied feather color.
Differences in environment can also drive trait evolution in both direct and indirect ways. In this Ecology and Evolution article, the authors tested whether the evolution of the ovenbird song was due to a direct influence of habitat characteristics or the indirect effect of body size and beak size, with their data supporting the latter scenario [3].
The evolution of some traits is complex and involves multiple steps. In this PLOS Biology article, the authors describe the evolution of cooperative breeding (in which nonfamily members share in brood care) in birds [4] (Fig 2). They find that birds first evolved family living with prolonged parent-offspring interactions, followed by a second step with the retained offspring helping at the nest. Thus, this family living scenario acted as a stepping stone to cooperative breeding, which they link to ecological resiliency.
Whether related species co-occur in the same region and ecosystem depends on multiple factors, as described in this PLOS ONE article [5]. By probing data on hummingbird assemblages in the Northern Andes with a new model, they test how environment, dispersal, and competition impact the likelihood of co-occurrence.
Another group of organisms frequently used to study trait evolution is angiosperms or flowing plants. Angiosperms are an extremely successful and diverse group, and while flowers are extremely varied today, they all evolved from the same original flowering plant. But what did that first flower look like? In this article published in Nature Communications, researchers describe their work reconstructing the ancestral angiosperm flower and its subsequent diversification [6] (Fig 3).
The evolution of traits always originates with genomic changes. In an article published in PLOS Biology, the authors describe how a systematic reduction in genome size may have led to the explosive success of angiosperms [7]. Smaller genomes mean smaller cells, allowing plants to pack more veins and stomata into a given leaf area, improving carbon dioxide (CO 2 ) uptake and photosynthetic carbon gain, traits that allowed angiosperms to outcompete ferns and gymnosperms.
Within angiosperms, some groups are more diverse than others. Another PLOS Biology paper reveals how seed size correlates to rate of species formation, finding that faster rates of seed size change (which they use as a proxy for adaptability) are associated with faster speciation and thus more diversity within a group [8].
Before widespread genome sequencing, comparative analysis of gross anatomical traits was used to define the phylogenetic relationships of species. For angiosperms, this analysis was done on pollen morphology. In this PLOS ONE article, the authors present improved morphometric and morphospace methods to evaluate pollen change in the order of Myrtales [9]. This analysis allowed the authors to investigate patterns of convergent evolution and the effects of latitude. It isn't all just flowering plants and birds in the trait evolution field. While it is well established that snakes evolved from lizards, the initial ecological role of snakes is still unclear. The comparative analysis of the snake skulls described in this Nature Communications article suggests that snakes first evolved as fossorial or burrowing creatures, then diversified into surface and marine forms [10].
During speciation, lineages that have begun to diverge sometimes interact and begin to interbreed, which leads to introgression. In this PLOS Genetics paper, the authors identify introgression in species of Caribbean pupfish that influenced the evolution of jaw shape and size, eventually resulting in ability to utilize unique food resources [11].
Another PLOS Genetics article reconstructs evolutionary changes of gene expression phenotypes across multiple species of filamentous fungi to understand and identify recent shifts in gene function that impact the development of the sexual fruiting bodies [12].
For more detailed reading, please see the associated PLOS Collection [13].