Fig 1.
Open Science and Communication.
(A) The COVIDTracker home page (coviditrackerct.com). Using an easy to maintain online platform, background information and regular reports are shared with the general public. (B) Our workflow from data generation, to rapid testing and communication, following principles of Open Science. (C) A maximum-likelihood phylogenetic tree showing 1048 SARS-CoV-2 genomes, including the first 200 SARS-CoVi2 genomes sequenced by our group. (D) The phylogeographic reconstruction of the genomes shown in (C) reveals the potential sources of introductions and patterns of viral spread within Connecticut. The size of the nodes represents the number of genomes sampled in the corresponding area, and the edges depict viral spread events between these areas. The results, which are embedded into our reports (available on covidtrackerct.com/portfolio/current/), can also be viewed standalone by loading output files hosted on GitHub (https://github.com/grubaughlab/CT-SARS-CoV-2).