CellProfiler 3.0: Next-generation image processing for biology

• Claire McQuin ,

  Contributed equally to this work with: Claire McQuin, Allen Goodman, Vasiliy Chernyshev, Lee Kamentsky, Beth A. Cimini, Kyle W. Karhohs

  Roles Conceptualization, Formal analysis, Software, Writing – original draft, Writing – review & editing

  Affiliation Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, United States of America

  ⨯
• Allen Goodman ,

  Contributed equally to this work with: Claire McQuin, Allen Goodman, Vasiliy Chernyshev, Lee Kamentsky, Beth A. Cimini, Kyle W. Karhohs

  Roles Conceptualization, Investigation, Software

  Affiliation Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, United States of America

  ⨯
• Vasiliy Chernyshev ,

  Contributed equally to this work with: Claire McQuin, Allen Goodman, Vasiliy Chernyshev, Lee Kamentsky, Beth A. Cimini, Kyle W. Karhohs

  Roles Data curation, Investigation, Methodology, Software, Validation, Visualization, Writing – review & editing

  Affiliations Skolkovo Institute of Science and Technology, Skolkovo, Moscow Region, Russia, Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia

  ⨯
• Lee Kamentsky ,

  Contributed equally to this work with: Claire McQuin, Allen Goodman, Vasiliy Chernyshev, Lee Kamentsky, Beth A. Cimini, Kyle W. Karhohs

  Roles Conceptualization, Software

  Affiliation Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, United States of America

  ⨯
• Beth A. Cimini ,

  Contributed equally to this work with: Claire McQuin, Allen Goodman, Vasiliy Chernyshev, Lee Kamentsky, Beth A. Cimini, Kyle W. Karhohs

  Roles Conceptualization, Investigation, Methodology, Project administration, Software, Validation, Writing – review & editing

  Affiliation Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, United States of America

  ⨯
• Kyle W. Karhohs ,

  Contributed equally to this work with: Claire McQuin, Allen Goodman, Vasiliy Chernyshev, Lee Kamentsky, Beth A. Cimini, Kyle W. Karhohs

  Roles Investigation, Methodology, Software

  Affiliation Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, United States of America

  ⨯
• Minh Doan,

  Roles Methodology, Software, Writing – original draft, Writing – review & editing

  Affiliation Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, United States of America

  ⨯
• Liya Ding,

  Roles Data curation, Methodology, Software, Validation, Writing – review & editing

  Affiliation Allen Institute for Cell Science, Seattle, Washington, United States of America

  ⨯
• Susanne M. Rafelski,

  Roles Conceptualization, Methodology, Project administration, Resources, Supervision, Writing – review & editing

  Affiliation Allen Institute for Cell Science, Seattle, Washington, United States of America

  ⨯
• Derek Thirstrup,

  Roles Data curation, Methodology, Software, Validation, Writing – review & editing

  Affiliation Allen Institute for Cell Science, Seattle, Washington, United States of America

  ⨯
• Winfried Wiegraebe,

  Roles Conceptualization, Methodology, Resources, Supervision

  Affiliation Allen Institute for Cell Science, Seattle, Washington, United States of America

  ⨯
• Shantanu Singh,

  Roles Resources, Software, Writing – review & editing

  Affiliation Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, United States of America

  ⨯
• Tim Becker,

  Roles Investigation, Software, Visualization, Writing – review & editing

  Affiliation Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, United States of America

  ⨯
• Juan C. Caicedo,

  Roles Software, Writing – review & editing

  Affiliation Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, United States of America

  ⨯
• Anne E. Carpenter

  Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: anne@broadinstitute.org

  Affiliation Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, Massachusetts, United States of America

  ⨯