About the Authors
- Nalia Ismael
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Contributed equally to this work with: Nalia Ismael, Stephanie van Wyk
Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Visualization, Writing – original draft, Writing – review & editing
* E-mail: nalia.ismael@ins.gov.mz (NI); stephanievanwyk@sun.ac.za (SW); tulio@sun.ac.za (TO)
Affiliations Instituto Nacional de Saúde (INS), Marracuene, Mozambique, Division of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa
- Stephanie van Wyk
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Contributed equally to this work with: Nalia Ismael, Stephanie van Wyk
Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing
* E-mail: nalia.ismael@ins.gov.mz (NI); stephanievanwyk@sun.ac.za (SW); tulio@sun.ac.za (TO)
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa
- Houriiyah Tegally
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Roles Data curation, Formal analysis, Visualization, Writing – review & editing
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa
- Jennifer Giandhari
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Roles Data curation, Formal analysis, Investigation, Methodology, Validation, Writing – review & editing
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa
- James Emmanuel San
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Roles Data curation, Formal analysis, Investigation, Methodology, Visualization, Writing – review & editing
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa
- Monika Moir
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Roles Data curation, Formal analysis, Visualization, Writing – review & editing
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa
- Sureshnee Pillay
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Roles Investigation, Methodology, Writing – review & editing
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa
- Christian Utpatel
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Roles Methodology, Validation
Affiliation Molecular and Experimental Mycobacteriology, Research Center Borstel, Borstel, Germany
- Lavanya Singh
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Roles Investigation, Methodology, Validation
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa
- Yeshnee Naidoo
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Roles Methodology, Validation
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa
- Upasana Ramphal
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Roles Investigation, Methodology, Validation
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa
- Nédio Mabunda
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Roles Conceptualization, Methodology, Resources, Validation
Affiliation Instituto Nacional de Saúde (INS), Marracuene, Mozambique
- Nuro Abílio
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Roles Conceptualization, Data curation, Investigation, Methodology
Affiliation Instituto Nacional de Saúde (INS), Marracuene, Mozambique
- Paulo Arnaldo
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Roles Conceptualization, Funding acquisition, Investigation
Affiliation Instituto Nacional de Saúde (INS), Marracuene, Mozambique
- Joicymara Xavier
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Roles Data curation, Formal analysis, Visualization
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa, Institute of Agricultural Sciences, Universidade Federal dos Vales do Jequitinhonha e Mucuri, Unaí, Brasil
- Daniel Gyamfi Amoako
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Roles Investigation, Methodology, Writing – review & editing
Affiliations Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service, Johannesburg, South Africa, School of Health Sciences, College of Health Sciences, University of KwaZulu-Natal, KwaZulu-Natal, South Africa
- Josie Everatt
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Roles Investigation, Methodology, Validation, Writing – review & editing
Affiliation Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service, Johannesburg, South Africa
- Yajna Ramphal
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Roles Investigation, Methodology, Validation
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa
- Arisha Maharaj
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Roles Investigation, Methodology, Validation
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa
- Leonardo de Araujo
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Roles Funding acquisition, Project administration
Affiliation Molecular and Experimental Mycobacteriology, Research Center Borstel, Borstel, Germany
- Ugochukwu J. Anyaneji
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Roles Investigation, Methodology, Validation
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa
- Derek Tshiabuila
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Roles Investigation, Methodology
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa
- Sofia Viegas
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Roles Funding acquisition, Investigation, Methodology, Resources, Validation, Writing – review & editing
Affiliation Instituto Nacional de Saúde (INS), Marracuene, Mozambique
- Richard Lessells
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Roles Validation, Writing – review & editing
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa
- Susan Engelbrecht
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Roles Conceptualization, Funding acquisition, Investigation, Methodology, Supervision, Writing – review & editing
Affiliation Division of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa
- Eduardo Gudo
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Roles Conceptualization, Funding acquisition, Investigation, Methodology, Resources, Supervision, Validation, Writing – review & editing
Affiliation Instituto Nacional de Saúde (INS), Marracuene, Mozambique
- Ilesh Jani
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Roles Conceptualization, Funding acquisition, Resources, Writing – review & editing
Affiliation Instituto Nacional de Saúde (INS), Marracuene, Mozambique
- Stefan Niemann
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Roles Conceptualization, Funding acquisition, Resources
Affiliations Molecular and Experimental Mycobacteriology, Research Center Borstel, Borstel, Germany, German Center for Infection Research, Partner Site Hamburg-Lübeck-Borstel-Riems, Borstel, Germany
- Eduan Wilkinson
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Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa
- Túlio de Oliveira
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Roles Conceptualization, Funding acquisition, Investigation, Methodology, Resources, Supervision, Validation, Writing – review & editing
* E-mail: nalia.ismael@ins.gov.mz (NI); stephanievanwyk@sun.ac.za (SW); tulio@sun.ac.za (TO)
Affiliations Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa, Kwazulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of Kwazulu-Natal, Durban, South Africa
Competing Interests
The authors have declared that no competing interests exist.