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Revised Phylogeny and Novel Horizontally Acquired Virulence Determinants of the Model Soft Rot Phytopathogen Pectobacterium wasabiae SCC3193

Figure 1

Phylogenetic tree constructed of 51 orthologous protein groups from 53 bacterial strains and yeast as an outgroup.

For the selection of the orthologous groups, reciprocal best hits were determined based on similarities detected using the fast protein sequence database search tool SANS. The ortholog groups were aligned using Muscle and bootstrapped trees were created with RAxML. Consensus tree was built using Consense and visualized with iTOL. The values presented in the figure indicate bootstrap values calculated based on 51000 bootstrapped trees. The Pectobacterium and Dickeya groups are highlighted.

Figure 1

doi: https://doi.org/10.1371/journal.ppat.1003013.g001