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Microbial ecology

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Paul J. McMurdie, Susan Holmes

Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing

Andrei Prodan, Valentina Tremaroli, [ ... ], Evgeni Levin

Architectural Design Drives the Biogeography of Indoor Bacterial Communities

Steven W. Kembel, James F. Meadow, [ ... ], Jessica L. Green

Human Occupancy as a Source of Indoor Airborne Bacteria

Denina Hospodsky, Jing Qian, [ ... ], Jordan Peccia

Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing

Dylan P. Smith, Kabir G. Peay

Identifying Keystone Species in the Human Gut Microbiome from Metagenomic Timeseries Using Sparse Linear Regression

Charles K. Fisher, Pankaj Mehta

Insights from Characterizing Extinct Human Gut Microbiomes

Raul Y. Tito, Dan Knights, [ ... ], Cecil M. Lewis Jr

Characterization of Staphylococcus and Corynebacterium Clusters in the Human Axillary Region

Chris Callewaert, Frederiek-Maarten Kerckhof, [ ... ], Nico Boon

Soil Bacterial Diversity Screening Using Single 16S rRNA Gene V Regions Coupled with Multi-Million Read Generating Sequencing Technologies

Sotirios Vasileiadis, Edoardo Puglisi, [ ... ], Marco Trevisan

Investigating the Impact of Storage Conditions on Microbial Community Composition in Soil Samples

Benjamin E. R. Rubin, Sean M. Gibbons, [ ... ], Jack A. Gilbert

The Influence of Staphylococcus aureus on Gut Microbial Ecology in an In Vitro Continuous Culture Human Colonic Model System

Thippeswamy H. Sannasiddappa, Adele Costabile, Glenn R. Gibson, Simon R. Clarke

Fecal Microbiota in Premature Infants Prior to Necrotizing Enterocolitis

Volker Mai, Christopher Michael Young, [ ... ], Josef Neu

Pyocyanin Promotes Extracellular DNA Release in Pseudomonas aeruginosa

Theerthankar Das, Mike Manefield

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