Advertisement
Browse Subject Areas
?

Click through the PLOS taxonomy to find articles in your field.

For more information about PLOS Subject Areas, click here.

  • Loading metrics

The advantage of being slow: The quasi-neutral contact process

  • Marcelo Martins de Oliveira ,

    Contributed equally to this work with: Marcelo Martins de Oliveira, Ronald Dickman

    Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

    mmdeoliveira@ufsj.edu.br

    Affiliation Departamento de Física e Matemática, Campus Alto Paraopeba, Universidade Federal de São João del Rei, Ouro Branco, Minas Gerais - Brazil

  • Ronald Dickman

    Contributed equally to this work with: Marcelo Martins de Oliveira, Ronald Dickman

    Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

    Affiliation Departamento de Física and National Institute of Science and Technology for Complex Systems, Instituto de Ciências Exatas, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais - Brazil

The advantage of being slow: The quasi-neutral contact process

  • Marcelo Martins de Oliveira, 
  • Ronald Dickman
PLOS
x

Abstract

According to the competitive exclusion principle, in a finite ecosystem, extinction occurs naturally when two or more species compete for the same resources. An important question that arises is: when coexistence is not possible, which mechanisms confer an advantage to a given species against the other(s)? In general, it is expected that the species with the higher reproductive/death ratio will win the competition, but other mechanisms, such as asymmetry in interspecific competition or unequal diffusion rates, have been found to change this scenario dramatically. In this work, we examine competitive advantage in the context of quasi-neutral population models, including stochastic models with spatial structure as well as macroscopic (mean-field) descriptions. We employ a two-species contact process in which the “biological clock” of one species is a factor of α slower than that of the other species. Our results provide new insights into how stochasticity and competition interact to determine extinction in finite spatial systems. We find that a species with a slower biological clock has an advantage if resources are limited, winning the competition against a species with a faster clock, in relatively small systems. Periodic or stochastic environmental variations also favor the slower species, even in much larger systems.

1 Introduction

The search for mechanisms that permit the coexistence and maintenance of species diversity is an important problem in ecology [1]. In large, well-mixed populations, the dynamics can be accurately described by deterministic rate equations such as the paradigmatic Lotka-Volterra model [13]. However, deterministic equations cannot describe the number fluctuations and spatial degrees of freedom observed in finite and spatially extended systems [4]. Furthermore, there is evidence that spatial structure can facilitate coexistence of similar competitors [5, 6]. Local symbiotic interspecific interactions can also favor coexistence in these cases [7, 8].

In a finite ecosystem, extinction arises naturally when two or more species compete for the same resources, as predicted by the competitive exclusion principle [911]. An important question that arises is: When coexistence is not possible, which mechanisms confer advantage to a given species against the others? In general it is expected that the species with the higher reproductive/death ratio will win the competition [12], but other mechanisms have been found to change this scenario dramatically. For example, Gabel, Meerson and Redner [13] showed recently that asymmetry in interspecific competition can induce survival of the scarcer species (SS), allowing it to out-compete a more populous one. The same conclusion was shown to apply to spatially extended model [14]. Pigolotti and Benzi [15] demonstrated that an effective selective advantage emerges when two species diffuse at different rates; in this case, competition is biased towards the fastest species. In addition to two-species competition, such behaviors can also arise in social systems, for example, in opinion formation [16].

In this work we examine competitive advantage in the context of stochastic spatial population models, using a two-species contact process. Originally proposed as a toy model for epidemic spreading, the contact process (CP) [17] can also be interpreted as a stochastic single-species birth-and-death process with spatial structure [4]. In the CP, each individual can reproduce asexually with rate λ, or die with a unitary rate. Reproduction is only possible at vacant sites neighboring the parent organism, thus representing competition for space. As the reproduction rate λ is varied, the system undergoes a continuous phase transition between extinction and survival at a critical value, λc [1822]. In the two-species CP considered here, both species have the same reproduction/death ratio, so that in isolation each would have the same stationary population density. The two species differ in their overall rapidity: the reproduction and death rates of the slow species (B) are both a factor of α < 1 smaller than those of the fast species (A). Thus for each generation of the slower species, 1/α generations will have transpired for the faster species. In evolutionary ecology such a situation is called “quasi-neutral”, since both species are only neutral in the deterministic limit (Neutral theories, in the context of ecology and genetics, assume that random processes, such as demographic stochasticity, dispersal, speciation and ecological drift, have a stronger impact than differences in species and their interdependence [2326]). More recently, Kogan et al. [27] applied a perturbation method based on time-scale separation to study quasi-neutral competition in two-strain diseases. They found that the slow strain has a competitive advantage for uniform initial conditions, but the fast strain is more likely to win when a few infectives of both strains are introduced into a susceptible population.

Multispecies (or multitype) contact processes have been used to model systems of sessile species with neutral community structure. They have proven useful in understanding abundance distributions and species-area relationships [28, 29], but, to our knowledge, the effects of quasi-neutral competition have not been addressed yet.

In the present work, we find that the species with the longest lifecycle (i.e., slower dynamics) has a competitive advantage in an ecosystem with spatial structure when the resources are finite. We find that environmental fluctuations also confer an advantage to the slower species.

In a broader perspective, our work highlights the role of demographic and environmental noise when two stochastic populations competing in the same domain evolve on different timescales. Such a timescale separation can also be relevant in emerging phenomena in opinion dynamics [30].

The remainder of this paper is organized as follows. In the next section we introduce the model and analyze its mean-field theory. In Sec. 3 we present and discuss our results; Sec. 4 is devoted to conclusions.

2 Materials and methods

Model and mean-field theory

We define the contact process with a faster species (CPFS) as follows. Consider two species, A and B, which inhabit in the same lattice. Each individual of species A attempts to create a new individual at one of its first neighbor sites with rate λ and dies with rate 1. Individuals of species B follow the same dynamics but with creation rate αλ and death rate α, with 0 ≤ α ≤ 1. Note that the dynamics of isolated A or B populations is the same as in the basic contact process, but that the “biological clock” of species B is α times slower than that of species A. In other words, for each B generation, 1/α generations will transpire for species A. Each site of the lattice can be in one of three states: empty, occupied by A, or occupied by B. Since simultaneous occupation by A and B is forbidden, the species compete for space.

The macroscopic mean-field (MF) equations for the model are (1) which have the stationary solutions (ρA, ρB) = (0, 0), (0, 1 − λ−1) and (1 − λ−1, 0). In fact, there is a line of stationary solutions, ρA = s, ρB = (1 − x)ρs, where ρs = 1 − 1/λ and 0 ≤ x ≤ 1. In a linear stability analysis, there is a zero eigenvalue along this line. Thus in the presence of noise we expect fluctuations to take the system to one of the absorbing points, x = 1 or x = 0.

Neuhauser [31] proved rigorously that coexistence of competing contact processes (with α = 1) is impossible on the square lattice, Z2 if the species have equal death rates, and have the same dispersal distribution (This applies applies only to the case λA = λB and μA = μB, and equal dispersal distributions. If one species disperses faster than other than coexistence is possible for some values of λA and λB.). This is in agreement with the competitive exclusion principle [9], which states that the number of coexisting species is smaller than the number of resources they compete for. (For instance, in our two-species model we have one resource, empty sites, with density ρ0 = 1 − ρAρB.) If both species are supercritical, i.e., have λi > λc, where λc is the critical value of the contact process, the species with higher birth rate will win the competition.

In general, it is expected that the superior competitor (the species with the higher reproductive/death ratio) will win the competition [31]. The model we consider here represents a less obvious scenario, since both species have the same ratio of reproduction to death rates, and in the macroscopic limit, the two species might be expected have the same extinction probability. However, the species with the fast “biological clock” is more subject to temporal density fluctuations; the discrete and spatial character of the individuals may change the scenario. To investigate these effects, in the next section we study the CPFS model in finite systems with spatial structure. In finite systems, extinction is always inevitable, due to the existence of absorbing states. In this context, the quasistationary (QS) distribution describes the asymptotic (long-time) properties of a finite system conditioned on survival [3235]. The quasi-stationary properties converge to the stationary properties in the limit of infinite system size.

3 Results and discussion

3.1 Initial-condition dependence

Before studying finite, stochastic populations, we take a closer look at the MF equations, Eq (1). Although, as noted, these equations admit stationary solutions dominated by either species, near the critical point λc = 1, most of the space of initial conditions (ICs) flows to steady states with . Note that Eq (1) imply that (2) from which one has (3) Then, using the fact that in the active phase, the stationary populations satisfy , we see that the initial B population density, , required for equal final densities is, (4) Thus, for α ≪ 1, grows quite slowly with ρA,0, and most ICs yield final states with . Fig 1, shows the separatrix between A- and B-dominated final states for several choices of λ and α. The share of ICs leading to ρB > ρA decreases with increasing α and λ.

thumbnail
Fig 1. (Color online) MF equations: Boundaries between initial populations that lead to a stationary solution with ρA > ρB (to the left of the boundary) or vice-versa.

Black curves: λ = 1.1, red curves: λ = 1.5. Dotted lines: α = 0.01; solid lines: α = 0.1; dashed lines: α = 0.5.

https://doi.org/10.1371/journal.pone.0182672.g001

Some insight into this apparent advantage of the slow species is afforded by noting that for λ close to, but larger than λc, most ICs lie above the stationary line ρA + ρB = 1 − λ−1. Since the rate of decrease of lnρB is a factor of α smaller than that of lnρA, most ICs in this region flow to a stationary solution with ρB > ρA. By contrast, the majority of ICs below the stationary line flow to final states with ρB < ρA. The more rapid growth of lnρA in this region leads to dominance of the fast species, even for some ICs with ρB,0 > >ρA,0. These trends are illustrated in Fig 2. Summarizing, near the critical point, high initial densities favor the slow species and vice-versa. ICs above the stationary line arise if λ is reduced from a value well above λc to the vicinity of the critical point, as may occur, for instance, under periodic modulation of λ (see Sec. 3.3).

thumbnail
Fig 2. MF equations: Trajectories in the ρBρA plane for λ = 1.5 and α = 0.1.

All trajectories terminate on the stationary line, ρB + ρA = 1/3. Most of the trajectories originating below this line terminate with ρA > ρB, i.e., to the left of the point (1/6, 1/6) denoted by a + sign.

https://doi.org/10.1371/journal.pone.0182672.g002

3.2 MF equations with noise

Adding noise to the MF equations does not appear to change the above conclusions. We study the effect of noise by including independent additive noise terms, ξA(t) and ξB(t) to Eq 1, so that A/dt = λ(1 − ρAρB)ρAρA + ξA(t), and similarly for species B, where ξA(t) is uniform on the interval [−γ, γ], and chosen independently at each time step (dt = 0.01) of the numerical integration. Since noise leads to one or another of the species going extinct, we analyze the extinction probability of species A, pex, A, as well as the mean densities over the evolution, as a function of the initial density, ρA,0 = ρB,0. We find that, as in the noise-free case, higher initial densities lead to larger mean densities of the slow species. Associated with ρB > ρA is a higher probability of the fast species going extinct first, i.e., pex,A > 1/2. We verify this for noise intensity γ = 0.01–1, λ = 1.1−1, 5, and for α = 0.1–0.5. For strong noise (i.e., γ ≃ 1), however, the mean time to extinction becomes short (on the order of 10 time units or less), so that the results no longer represent a quasistationary regime. Fig 3 shows that the species with smaller mean density has a higher extinction probability. We have not found evidence for SS (corresponding to pex,A > 1/2 while ρB < ρA) in the noise-driven MF equations.

thumbnail
Fig 3. (Color online) MF equations with additive noise.

Species-A extinction probability pex,A − .5 (filled symbols) and excess mean population density ρBρA (open symbols) versus initial density ρA = ρB for λ = 1.1 and α = 0.1. Noise intensity γ = 0.01 (squares and solid lines) and 0.1 (circles and dashed lines). Points reflect averages over 103—104 independent realizations. Density differences are multiplied by a factor of 10 for visibility. Error bars smaller than symbols. Inset: stationary population densities (solid line) and (dashed line) in the absence of noise.

https://doi.org/10.1371/journal.pone.0182672.g003

As noted in the preceding subsection, the slow species should enjoy an advantage when, starting from a stationary state in the active phase, the creation rate λ is reduced. We verify this prediction in simulations of the noisy MF equations. First, a stationary state is established for creation rate λ; then at time zero, this rate is reduced to λ′. Fig 4, for λ = 1.6, λ′ = 1.2, α = 0.1 and noise intensity γ = 0.01, shows that following the sudden decrease in creation rate, the slow species population is greater on average than that of the fast species, although the latter dominates prior to the reduction. Similar results are found for other parameter sets. As might be expected, following a sudden increase in the creation rate, the faster species is found to attain a higher density than the slower one.

thumbnail
Fig 4. MF equations with additive noise.

Main graph shows the densities of the fast and slow species (black and red curves, respectively) versus time; at time zero the reproduction rate λ is reduced from 1.6 to 1.2. Other parameters: α = 0.1, γ = 0.01. Inset: average densities in a sample of 500 independent realizations.

https://doi.org/10.1371/journal.pone.0182672.g004

3.3 Periodic environment

A periodic environment is pertinent, for example, to species subject to seasonal variation of resources or to a parasite subject to the diurnal variation of the host. We examine the mean-field equations, Eq (1), under periodic forcing of the form λ = λ(t) = λ0+r cos ωt. Integrating the equations numerically, we find that, following a transient, the solutions assume a periodic form with the same angular frequency, ω, as λ(t), provided the mean value λ0 > 1, the mean-field critical value for constant λ. (For λ0 < 1 the densities oscillate with an exponentially decaying envelope, while for λ0 = 1 the envelope decays ∝ 1/t.)

Fig 5 shows a typical time series of the population densities, for λ0 = 1.1, r = 0.1, and α = ω = 0.1; in this case the stationary mean population of the fast species, , is about four orders of magnitude smaller than that of the slow species. The inset shows that the density of species B is approximately 90° out of phase with λ. The results in Fig 5 were obtained using equal initial densities, ρA,0 = ρB,0 = 0.25. For these initial densities, we find that for a wide range of frequencies, as shown in Fig 6. Varying the initial densities, the system of equations relaxes to a long-time periodic regime with , similar to the stationary line, ρA+ρB = 1 − λ−1, found in MFT for a steady environment. The slow species enjoys an advantage for large initial densities, smaller α and higher frequencies. Fig 7 shows the lines in the plane of initial densities separating steady states with and vice-versa. Similar to the MFT results for constant λ discussed above, for small α and λ near unity, species A dominates only for ICs in a small region in this plane, characterized by small initial densities, or by ρB,0ρA,0. Increasing either α or λ, the advantage of the slow species is reduced. The advantage of the slow species appears to be robust to increases in the amplitude r of periodic modulation.

thumbnail
Fig 5. MF equations with periodic λ: Population densities ρB (upper) and ρA (lower), versus time, for λ0 = 1.1, r = 0.1, ω = 0.1 and α = 0.1.

The inset shows ρB(t) versus λ(t), with an initial transient followed by a periodic orbit.

https://doi.org/10.1371/journal.pone.0182672.g005

thumbnail
Fig 6. MF equations with periodic λ: Mean densities ρB (dashed lines) and ρA (solid) versus ω, for λ0 = 1.1 and r = 0.1.

Red: α = 0.1 and ρA,0 = ρB,0 = 0.25; black: α = 0.1 and ρA,0 = ρB,0 = 0.05; blue: α = 0.5 and ρA,0 = ρB,0 = 0.25. Population densities for α = 0.5 and ρA,0 = ρB,0 = 0.05 (not shown) are very similar to those for α = 0.1 and ρA,0 = ρB,0 = 0.05.

https://doi.org/10.1371/journal.pone.0182672.g006

thumbnail
Fig 7. (Color online) Mean-field analysis for periodic environment.

Initial conditions leading to () correspond to regions to the left (right) of curves. Black: λ = 1.1, α = 0.1; red: λ = 1.1, α = 0.5; blue: λ = 1.5, α = 0.1; green: λ = 1.5, α = 0.5; pink: λ = 1.1, α = 0.1, but r = 0.5. Amplitude of periodic modulation r = 0.1 in all other cases. Solid lines: frequency ω = 0.01; dashed lines ω = 0.1. For λ = 1.5 (blue and green) the curves for the two frequencies are indistinguishable.

https://doi.org/10.1371/journal.pone.0182672.g007

The above conclusions are robust to the inclusion of an additive noise in λ, corresponding to a multiplicative noise in the evolution of ρA and ρB that affects the two species equally. Specifically, we consider λ = λ(t) = λ0 + r cos ωt + ξ(t), with ξ(t) uniform on the interval [−γ, γ]. (The value of ξ is chosen anew at each time step, Δt = 0.01.) In this case the species-dominance patterns identified above are preserved, even for rather large noise amplitudes (γ = 1). If we instead include independent, identically distributed additive noises ξA(t) and ξB(t) in the MF equations Eq (1), one or another of the populations eventually goes extinct, as found for constant λ. The behavior of pex,A is broadly similar to that found in fixed-λ case: for small initial densities, which lead to , we find pex, A < 1/2 (i.e., the slow species tends to go extinct first). (Here, the initial densities are equal, and the mean densities are time averages from time zero until one of the species goes extinct.) Fig 8 shows, nevertheless, that there is a considerable range of initial densities exhibiting SS, that is, whilst pex,A > 1/2.

thumbnail
Fig 8. (Color online) Mean-field analysis for periodic environment with independent additive noise terms affecting each species.

Slow-species extinction probability pex,A (upper curve) and mean population densities (lower curves) (solid) and (dashed), versus initial density, with ρB,0 = ρA,0. Noise intensity γ = 0.1, other parameters as in Fig 5.

https://doi.org/10.1371/journal.pone.0182672.g008

Summarizing, in the context of large, well-mixed populations subject to a periodic (sinusoidal) environmental variation, the slower species generally enjoys an advantage, although situations dominated by the fast species also exist. A similar pattern is observed under additive noise (independently affecting the two species), including a regime in which the slower species is less populous, but tends to outlive the faster one.

3.4 Finite stochastic systems

3.4.1 Complete graph.

A complete graph is one in which all sites are neighbors. Since all sites are equivalent, when formulated on such a structure, a stochastic process is specified by one or a few variables, thereby permitting an exact analysis. Since each site interacts with all others, the behavior is mean-field-like.

The state of the CPFS on a complete graph is specified by the variables nA and nB, the number of sites occupied by species A and B, respectively. On a graph of N sites, the nonzero transition rates (with the primed variables denoting the state after the transition) are, (5) with nA = nB = 0 absorbing (Note that the subspaces nA = 0 and nB = 0 are also absorbing).

In order to evaluate the QS probability distribution, we apply an iterative scheme, proposed in [36]. We consider the QS state as the subspace with at least one individual of each species. From any nonabsorbing initial configuration the conditional probability distribution converges to the QS probability distribution Q(nA, nB) after a few iterations. Using the QS distribution, we calculate the QS densities of species A and B. Another important quantity is the lifetime of the QS state, τ, given by τ = 1/A0, with A0 = ∑nB Q(1, nB)W(0, nB; 1, nB) + ∑nA Q(nA, 1)W(nA, 0; nA, 1) the flux of probability to the absorbing subspace. Note that A0,A ≡ ∑nB Q(1, nB)W(0, nB; 1, nB) is the exit rate from the QS state to the subspace with nA = 0, and similarly for A0,B ≡ ∑nA Q(nA, 1)W(nA, 0; nA, 1). We therefore interpret 1/A0,A and 1/A0,B as the QS lifetimes of species A and B, respectively.

In Fig 9 we show the QS densities of species A and B and the lifetime of the QS state as a function of α in the supercritical regime, λ = 1.2, for a graph of N = 200 sites. Species A (the faster) is always more populous, however, its lifetime is shorter. Therefore, in this case, species B, with a smaller population than A, is more likely to survive. The advantage of species B vanishes when α → 1, as expected.

thumbnail
Fig 9. (Color online) Quasistationary population densities of species A (blue) and B (green) and lifetime of the QS state on a complete graph versus α, for λ = 1.2 and N = 200.

https://doi.org/10.1371/journal.pone.0182672.g009

In Fig 10 we show the QS densities of species A and B and the lifetime of the QS state as function of λ for α = 0.1, for graphs of N = 100 and N = 200 sites. The slower species B is again less numerous than species A for all values of λ. There is nevertheless a range of λ values above the critical value λc = 1 in which species B survives for a longer time than A; increasing λ further, the advantage vanishes.

thumbnail
Fig 10. (Color online) Quasistationary population densities (upper panel) and lifetime of the QS state (lower panel) on a complete graph for species A (blue) and B (green) versus λ, for α = 0.1.

Graph sizes: N = 100 (dashed) and N = 200.

https://doi.org/10.1371/journal.pone.0182672.g010

The advantage of the slower species in an environment with limited resources is evident in Fig 11, which shows the probability of the faster species (A) winning the competition. In Fig 11(a), for λ close to λc, the faster species goes extinct first for almost all values of the initial densities, similar to the results for the MF equations with additive noise. The advantage is less pronounced when increasing λ, as shown Fig 11(b), and vanishes when α = 1 (see Fig 11(c)).

thumbnail
Fig 11. (Color online) Probability of the faster species (A) winning the competition for the process on a complete graph, as function of initial species populations, nA(0) and nB(0).

Graph size: N = 100.

https://doi.org/10.1371/journal.pone.0182672.g011

Our results are in agreement with the theoretical predictions of Lin et al. [37], who showed that demographic fluctuations break the degeneracy displayed by the deterministic rate equation description of the dynamics of two competing species differing only in the time scales of their life cycles, and with the results of Kogan et al. [27] for multi-strain diseases. Therefore the slower species enjoys a slight competitive advantage over the faster one.

3.4.2 Exact QS state for small rings.

Using the iterative method developed in [36], we determined the exact (numerical) QS probability distribution on rings of up to L = 14 sites. Similar to the results for the complete graph, we find that while the QS population of the slow species is smaller than than that of the fast one, its lifetime is considerably greater. An example of these results is shown in Fig 12. Due to the limited range of system sizes accessible to this analysis, we cannot extrapolate reliably to the infinite-size limit. We nevertheless note that the differences between densities ρA and ρB, and between lifetimes τA and τB, decrease with increasing system size, consistent with vanishing differences for L → ∞.

thumbnail
Fig 12. (Color online) Quasistationary population densities (lower) and lifetimes (upper) for fast (green lines) and slow (blue lines) species versus α on a ring of 14 sites, for λ = λc = 3.29785.

https://doi.org/10.1371/journal.pone.0182672.g012

3.4.3 Two dimensions.

We performed extensive Monte Carlo simulations of the CPFS on square lattices using quasi-stationary (QS) simulations [38, 39], restricting the dynamics to the subspace containing at least one individual of each species. Our results show that the QS density of the slower species B is always lower than that of the faster species A (see Fig 13).

thumbnail
Fig 13. (Color online) Square lattice: Quasistationary population densities ρA (solid lines) and ρB (dashed lines) versus reproduction rate λ, for α = 0.1 (red) and α = 0.5 (blue).

Linear system size: L = 80.

https://doi.org/10.1371/journal.pone.0182672.g013

The behavior of the QS densities and lifetimes is qualitatively similar to that on the complete graph. We again find a range of values of α for which the slower (and less numerous) species is more likely to survive than the faster (and more populous) one (Fig 14). This result is similar to the SS phenomenon [13]. In our model, however, SS only occurs for small system sizes. Fig 15 shows that the interval of λ values over which SS is observed decreases steadily with lattice size L. The lower boundary in Fig 15 which marks the active-aborning phase transition defines the pseudocritical points λc(L), which converge to the critical value λc when L → ∞.

thumbnail
Fig 14. (Color online) Square lattice: QS population densities (upper panel) of species A and B and lifetime of the QS state (lower panel) for λ = 1.65 and linear system size L = 80.

https://doi.org/10.1371/journal.pone.0182672.g014

thumbnail
Fig 15. (Color online) Boundaries of the SS regime in the λ—L plane for α = 0.1.

The lower boundary corresponds to the pseudocritical point, λc(L).

https://doi.org/10.1371/journal.pone.0182672.g015

3.5 Stochastic environment

The effects of environmental or temporal disorder in systems exhibiting absorbing phase transitions have attracted interest recently [4046]. In such cases, the control parameter varies stochastically, resulting in temporarily active (ordered) and absorbing (disordered) phases, whose effects are more relevant at the emergence of the phase transition. Since competitive dynamics often occurs in stochastic environments [41, 47, 48], in this section we investigate the impact of environmental noise on the CPFS on a complete graph. We assume that the basic reproduction rate fluctuates according to (6) where λ0 is constant and X(t) is the environmental noise, with 〈X(t)〉 = 0. In practice, we introduce the temporal disorder in the following way: at each time interval titti + Δt in the simulation, λ(t) assumes a new value, extracted from a uniform distribution with mean λ0 and width σ. More specifically, X(t) is evaluated using the formula X(t) = (2ξ − 1)σ, where ξ is a random number drawn from a uniform probability distribution ∈ [0, 1] updated at fixed time intervals, Δt.

In Fig 16 we show the results of simulations with temporal disorder for noise intensity σ = 0.8. At λ = λc = 1.0, both species go extinct, as expected. In the supercritical phase, the slower species is favored for region λc < λ < λ*, i.e., it has a higher survival probability than the faster one, despite being less populous. For λ > λ* both species are equally fit, and have the same probability of survival. Fig 16 shows that the advantage of the slower species increases when Δt (proportional to the noise autocorrelation time) is greater. This is because increasing Δt, periods with unfavorable values of λ become longer, and the faster species is more vulnerable to extinction during such periods. We therefore conclude that the slower species again enjoys an advantage under temporal disorder. In this case the advantage persists to much larger system sizes than in the absence of disorder (see Fig 16 for comparison with the constant-environment case).

thumbnail
Fig 16. (Color online) CPFS on complete graph with stochastic environment (QS simulations).

Pseudocritical point λc(N) (solid curve) and limit of the SS regime λ*(N) (circles) as function of system size N, for α = 0.1 and σ = 0.8. Dashed lines: limit of the SS regime for the constant environment case.

https://doi.org/10.1371/journal.pone.0182672.g016

4 Conclusion

In summary, in this work we have investigated competitive advantage in the context of quasi-neutral systems, using deterministic and stochastic mean-field descriptions, exact quasi-stationary distributions on a complete graph and small rings, and simulations on a two-dimensional lattice. We employ a two-species contact process (CP) in which the species differ only in the rates of their biological clocks, so that their reproduction/death ratios are the same. The CP features inter- and intraspecific competition for space. In the macroscopic (MF) description, the slower species enjoys an advantage in the form of a larger stationary population density for reproduction rates λ close to (but greater than) the critical value, and large initial population densities. This persists under periodic (sinusoidal) variation of the reproduction rate, and can lead to “survival of the scarcer” (SS) in the presence of additive noise. In finite stochastic systems, with spatial structure (lattices) or without it, (i.e., the complete graph), the slower species has a smaller population density than the faster one, but can have a longer mean lifetime. As a general tendency, the slow species is at an advantage in situations in which the overall population is decreasing, and vice-versa. Since ability to weather the former, unfavorable, situation may be critical to survival, a slower species may have a long-term advantage over a similar, faster one. In finite stochastic systems this SS phenomenon is most prominent in small systems near the critical point. The advantage of the slower species vanishes for large reproduction rates and/or system sizes. Our results suggest, however, that this advantage persists to large systems if the reproduction rate varies randomly, modeling a stochastic environment.

Thus our results provide new insights into how stochasticity and competition interact to determine survival in finite systems. We find that a species with a slower biological clock can be at an advantage if resources are limited, and/or if the system is subject to environmental variation. In the latter case (temporal disorder) the advantage is more robust, persisting for large system sizes. This advantage is also observed in the spatial model. In most cases, the faster species is subject to a larger amount of demographic noise, and is more vulnerable to extinction. As a consequence, we observe that starting from total densities greater than the quasi stationary values, the slow species usually lose less population and eventually dominate in the long term. The importance of incorporating demographic stochasticity into basic models of population genetics has been highlighted recently [27, 37, 4953]. It was shown that if two phenotypes have equal deterministic fitness, but one is subject to a larger amount of demographic noise than the other, then the effect of this noise can induce a selective drift in favor of the phenotype experiencing less noise. In the same way, it is easier to invade a noisy population than a stable one. Therefore, a study of spatial quasineutral models would be interesting in this context. It could also help to understand the persistence of some organisms in antimicrobial therapy [54, 55]. Here, variation tends to accumulate in different individuals of evolutionary populations in situations where new variants are neutral or quasi-neutral; if the population size is not so large, genetic drift can be a stronger force than selection [51, 56, 57].

Finally, we note that, beyond ecology [58], competition for resources is of vital importance in epidemiology [59] and social sciences [60]. Possible extensions of the present work include the study of spatial inhomogeneities in the environment [61]. Such quenched disorder in quasi-neutral models could induce the appearance of Griffiths phases [6264] and refuges that could enhance the competitive edge of the faster species [48]. A search for a general framework to study the “slower is faster” effect [65] (observed in pedestrian dynamics, vehicle traffic, logistics and social dynamics) is also an interesting research direction.

References

  1. 1. May RM, McLean AR. Theoretical ecology: principles and applications. Wiley Blackwell,Oxford; 2007.
  2. 2. Rockwood LL. Introduction to Population Ecology. Blackwell Publishing, Malden; 2006.
  3. 3. Pastor J. Mathematical Ecology of Populations and Ecosystems. Blackwell, Oxford; 2008.
  4. 4. Durrett R, Levin SA. The Importance of Being Discrete (and Spatial). Theor Pop Biology. 1994;46(3):363–394.
  5. 5. Condit R, Ashton PS, Baker P, Bunyavejchewin S, Gunatilleke S, Gunatilleke N, et al. Spatial Patterns in the Distribution of Tropical Tree Species. Science. 2000;288(5470):1414–1418. pmid:10827950
  6. 6. Velázquez J, Garrahan JP, Eichhorn MP. Spatial complementarity and the coexistence of species. PLoS ONE. 2014;9(12):e114979. pmid:25532018
  7. 7. de Oliveira MM, Santos RV, Dickman R. Symbiotic two-species contact process. Phys Rev E. 2012;86(1):011121.
  8. 8. de Oliveira MM, Dickman R. Phase diagram of the symbiotic two-species contact process. Phys Rev E. 2014;90(3):032120.
  9. 9. Levin SA. Community equilibria and stability, and an extension of the competitive exclusion principle. Am Naturalist. 1970;104(939):413–423.
  10. 10. Ovaskainen O, Meerson B. Stochastic models of population extinction. Trends in Ecology and Evolution. 2010;25(11):643–652. pmid:20810188
  11. 11. Kramer AM, Drake JM. Time to competitive exclusion. Ecosphere. 2014;5(5):1–16.
  12. 12. Durrett R. Coexistence in stochastic spatial models. Ann of Applied Prob. 2009;19:477–496.
  13. 13. Gabel A, Meerson B, Redner S. Survival of the scarcer. Phys Rev E. 2013;87(1):010101.
  14. 14. dos Santos RV, Dickman R. Survival of the scarcer in space. J Stat Mech. 2013;2013(07):P07004.
  15. 15. Pigolotti S, Benzi R. Selective advantage of diffusing faster. Phys Rev Lett. 2014;112(18):188102. pmid:24856726
  16. 16. Crokidakis N, de Oliveira PMC. The first shall be last: Selection-driven minority becomes majority. Physica A. 2014;409:48–52.
  17. 17. Harris TE. Contact interactions on a lattice. Ann Probab. 1974;2:969–988.
  18. 18. Marro J, Dickman R. Nonequilibrium Phase Transitions in Lattice Models. Cambridge University Press, Cambridge; 1999.
  19. 19. Ódor G. Universality In Nonequilibrium Lattice Systems: Theoretical Foundations. World Scientific,Singapore; 2007.
  20. 20. Henkel M, Hinrichsen H, Lubeck S. Non-Equilibrium Phase Transitions Volume I: Absorbing Phase Transitions. Springer-Verlag, The Netherlands; 2008.
  21. 21. Hinrichsen H. Non-equilibrium critical phenomena and phase transitions into absorbing states. Adv Phys. 2000;49(7):815–958.
  22. 22. Ódor G. Universality classes in nonequilibrium lattice systems. Rev Mod Phys. 2004;76(3):663.
  23. 23. Kimura M, Takahata N. Population Genetics, Molecular Evolution, and the Neutral Theory: Selected Papers. Evolutionary biology. University of Chicago Press; 1995.
  24. 24. Hubbell SP. The Unified Neutral Theory of Biodiversity and Biogeography. Princeton University Press, Princeton.; 2008.
  25. 25. Alonso D, Etienne RS, McKane AJ. The merits of neutral theory. Trends in ecology & evolution. 2006;21(8):451–457.
  26. 26. Azaele S, Suweis S, Grilli J, Volkov I, Banavar JR, Maritan A. Statistical mechanics of ecological systems: Neutral theory and beyond. Rev Mod Phys. 2016;88(3):035003.
  27. 27. Kogan O, Khasin M, Meerson B, Schneider D, Myers CR. Two-strain competition in quasineutral stochastic disease dynamics. Phys Rev E. 2014;90(4):042149.
  28. 28. Weitz JS, Rothman DH. Scale-dependence of resource-biodiversity relationships. J Theor Biol. 2003;225(2):205–214. pmid:14575654
  29. 29. Cencini M, Pigolotti S, Muñoz MA. What ecological factors shape species-area curves in neutral models? PloS One. 2012;7(6):e38232. pmid:22675526
  30. 30. Mosquera-Donãte G, Boguñá M. Follow the leader: Herding behavior in heterogeneous populations. Phys Rev E. 2015;91(5):052804.
  31. 31. Neuhauser C. Ergodic theorems for the multitype contact process. Prob Theory Relat Fields. 1992;91:467–506.
  32. 32. Yaglom AM. Certain limit theorems of the theory of branching random processes. Dokl Akad Nauk SSSR. 1947;56:795–798.
  33. 33. Ferrari PA, Kesten H, Martínez A, Picco P. Existence of quasi-stationary distributions. A renewal dynamical approach. The annals of probability. 1995;23(2):501–521.
  34. 34. Nȧsell I. Extinction and quasi-stationarity in the Verhulst logistic model. J Theor Biol. 2001;211(1):11–27. pmid:11407888
  35. 35. Bartlett MS. Stochastic Population Models in Ecology and Epidemiology. Methuen, London; 1960.
  36. 36. Dickman R. Numerical analysis of the master equation. Phys Rev E. 2002;65(4):047701.
  37. 37. Lin YT, Kim H, Doering CR. Features of fast living: on the weak selection for longevity in degenerate birth-death processes. J Stat Phys. 2012;148(4):647–663.
  38. 38. de Oliveira MM, Dickman R. How to simulate the quasistationary state. Phys Rev E. 2005;71(1):016129.
  39. 39. de Oliveira MM, Dickman R. Quasi-stationary simulation: the subcritical contact process. Braz J Phys. 2006;36(3A):685–689.
  40. 40. Jensen I. Temporally disordered bond percolation on the directed square lattice. Phys Rev Lett. 1996;77(25):4988. pmid:10062687
  41. 41. Kamenev A, Meerson B, Shklovskii B. How colored environmental noise affects population extinction. Phys Rev Lett. 2008;101(26):268103. pmid:19437676
  42. 42. Vazquez F, Bonachela JA, López C, Muñoz MA. Temporal griffiths phases. Phys Rev Lett. 2011;106(23):235702. pmid:21770521
  43. 43. Vojta T, Hoyos JA. Infinite-noise criticality: Nonequilibrium phase transitions in fluctuating environments. Europhys Lett. 2015;112(3):30002.
  44. 44. de Oliveira MM, Fiore CE. Temporal disorder does not forbid discontinuous absorbing phase transitions in low-dimensional systems. Phys Rev E. 2016;94(5):052138. pmid:27967145
  45. 45. Solano CMD, de Oliveira MM, Fiore CE. Comparing the influence of distinct kinds of temporal disorder in a low-dimensional absorbing transition model. Phys Rev E. 2016;94(4):042123. pmid:27841620
  46. 46. Barghathi H, Hoyos JA, Vojta T. Contact process with temporal disorder. Phys Rev E. 2016;94(2):022111. pmid:27627250
  47. 47. Hidalgo J, Suweis S, Maritan A. Species coexistence in a neutral dynamics with environmental noise. J of Theor Biology. 2017;413:1–10.
  48. 48. Borile C, Molina-Garcia D, Maritan A, Muñoz MA. Coexistence in neutral theories: interplay of criticality and mild local preferences. J of Stat Mech. 2015;2015(1):P01030.
  49. 49. Parsons TL, Quince C. Fixation in haploid populations exhibiting density dependence II: The quasi-neutral case. Theor Popul Biol. 2007;72(4):468–479. pmid:17574641
  50. 50. Parsons TL, Quince C, Plotkin J. Absorption and fixation times for neutral and quasi-neutral populations with density dependence. Theor Popul Biol. 2008;74(4):302–310. pmid:18835288
  51. 51. Parsons TL, Quince C, Plotkin JB. Some consequences of demographic stochasticity in population genetics. Genetics. 2010;185(4):1345–1354. pmid:20457879
  52. 52. Chotibut T, Nelson DR. Evolutionary dynamics with fluctuating population sizes and strong mutualism. Phys Rev E. 2015;92(2):022718.
  53. 53. Constablea GWA, Rogers T, McKane AJ, Tarnita CE. Demographic noise can reverse the direction of deterministic selection. PNAS. 2016;113(32):E4745–E4754.
  54. 54. Baquero F. The 2010 Garrod Lecture: the dimensions of evolution in antibiotic resistance: ex unibus plurum et ex pluribus unum. Journal of antimicrobial chemotherapy. 2011; p. drk214.
  55. 55. Baquero F. Epigenetics, epistasis and epidemics. Evolution, Medicine, and Public Health. 2013;2013(1):86. pmid:24481189
  56. 56. Ohta T, Gillespie JH. Development of neutral and nearly neutral theories. Theoretical population biology. 1996;49(2):128–142. pmid:8813019
  57. 57. Ohta T. Near-neutrality in evolution of genes and gene regulation. Proceedings of the National Academy of Sciences. 2002;99(25):16134–16137.
  58. 58. Grover JP. Resource Competition (Population and Community Biology Series). Chapman and Hall, Springer; 1997.
  59. 59. Rothman KJ, Greenland S. K. J. Rothman and S. Greenland. Lippincott, Williams & Wilkins, Philadelphia; 1998.
  60. 60. Nagel J. Resource competition theories. Am Behavioral Scientist. 1995;38(3):442–458.
  61. 61. Borile C, Maritan A, Muñoz MA. The effect of quenched disorder in neutral theories. J of Stat Mech. 2013;2013(4):P04032.
  62. 62. Moreira AG, Dickman R. Critical dynamics of the contact process with quenched disorder. Phys Rev E. 1996;54(4):R3090.
  63. 63. de Oliveira MM, Ferreira SC. Universality of the contact process with random dilution. J Stat Mech. 2008;2008(11):P11001.
  64. 64. Vojta T, Farquhar A, Mast M. Infinite-randomness critical point in the two-dimensional disordered contact process. Phys Rev E. 2009;79(1):011111.
  65. 65. Gershenson C, Helbing D. When slower is faster. Complexity. 2015;21(2):9–15.