Brain-specific angiogenesis inhibitor 1 (BAI1)-associated protein 2-like 1 (BAIAP2L1), also known as insulin receptor tyrosine kinase substrate (IRTKS), is involved in plasma membrane protrusion and actin formation during cell morphogenesis and migration. BAIAP2L1 is recently reported to promote cell proliferation through activation of the EGFR-ERK pathway in hepatocellular carcinoma. In this study, we report the first comprehensive study of BAIAP2L1 upregulation in human ovarian cancer. Upregulation of BAIAP2L1 in ovarian tumors was first found during RNA screening and confirmed by immunohistochemical studies on ovarian cancers and other cancer types. Significant upregulation of BAIAP2L1 in ovarian cancer was validated by analyzing multiple independent cohorts in publicly available data sets. Furthermore, BAIAP2L1 protein expression in metastatic lesions was higher than the corresponding primary tumors. Functional assays in ovarian cancer cells revealed that BAIAP2L1 is involved in promoting cell proliferation and avoiding apoptosis. In conclusion, results of this study not only indicate that BAIAP2L1 can be used as a biomarker for human ovarian cancer but also reveal its role in cancer biology. Further elucidation of the role of BAIAP2L1 in context of the insulin receptor signaling pathways of cancer cells is warranted for developing cancer therapeutics by targeting cancer-specific metabolism.
Citation: Chao A, Tsai C-L, Jung S-M, Chuang W-C, Kao C, Hsu A, et al. (2015) BAI1-Associated Protein 2-Like 1 (BAIAP2L1) Is a Potential Biomarker in Ovarian Cancer. PLoS ONE 10(7): e0133081. https://doi.org/10.1371/journal.pone.0133081
Editor: David Wai Chan, The University of Hong Kong, HONG KONG
Received: March 27, 2015; Accepted: June 22, 2015; Published: July 29, 2015
Copyright: © 2015 Chao et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Data Availability: All relevant data are within the paper and its Supporting Information files.
Funding: This work was funded by Chang Gung Medical Foundation: CMRPG3E0391 (Chao A), CMRPG3C1621-2 (Tsai CL), CMRPG3C0281-3, CMRPG3C0941-2 and CRRPG3D0031 (Wang TH). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Competing interests: The authors of this manuscript have the following competing interests: Yi-Chao Lee is one of the inventors of US Patent No: 7192709B2, dated on Mar 20, 2007, assignee of Digigenomics Co, Ltd. The authors have declared that no competing interests exist.
Epithelial ovarian cancer is the leading cause of death in gynecological malignancies . It is, along with peritoneal carcinoma and fallopian tube carcinoma, the ninth most common death in women in Taiwan . The overall survival of ovarian cancer remains poor despite improvements in the treatment of ovarian cancer [3,4]. The typical late diagnosis of ovarian cancer, when the disease has already spread beyond the pelvis at the time of clinical presentation, is part of the reason for its poor outcome . Immunological detection of serum cancer antigen CA125  has been integrated into standard practice for the diagnosis of ovarian masses . CA125 is also useful for monitoring response and facilitating surveillance for patients with ovarian cancer . However, the level of CA125, with a sensitivity of 80%, is not elevated in all ovarian tumors, and the specificity can be affected by other malignancies, physiological conditions, and endometriosis . Therefore, the identification of additional markers is urgently needed to complement CA125 for early detection, treatment evaluation, and assessing prognosis of patients with ovarian cancer.
BAIAP2L1/IRTKS (Gene ID 55971) is located on chromosome 7q21.3-q22.1. BAIAP2L1 encodes a 511 amino-acid protein with molecular weight approximately 57 kD [10,11]. BAIAP2L1, along with BAIAP2 (IRSp53), BAIAP2L2 (FLJ22582), belong to the IRSp53 family, and all of them share the IMD (IRSp53 and Missing-in metastasis domain) and the SH3 domain . The IMD domain belongs to the larger family of the Bin-Amphipsin-Rev167 (BAR) domain , and the BAR domain forms a crescent-shaped dimmer that can bind highly curved, negatively charged membrane . In addition, the IMD has actin filament-binding ability . The SH3 domain is known for multiple protein-protein interactions . Therefore, the members of the IRSp53 family are viewed as scaffold proteins or adaptors that help the assembly of protein complexes to the actin filament or to the membrane with a specific curvature.
BAIAP2L1 can modulate clusters of short actin bundles during cell movement . In enterohemorrhagic Escherichia coli, many of the reports on BAIAP2L1 pertain its similarity to BAIAP2 in actin-rich membrane protrusions, called pedestals [16,17,18,19]. In mammalian cells, BAIAP2L1 has also been linked to Src-dependent cell migration [14,19,20] and MDM2-mediated p53 ubiquitination . In tumorigenesis, BAIAP2L1 has been reported to promote cell proliferation through activation of the EGFR-ERK pathway in hepatocellular carcinoma . Oncogenic FGF receptor 3 (FGFR3)-BAIAP2L1 fusion gene was identified in bladder cancers  and lung cancers , and its identification may aid in selecting patients for FGFR-targeted therapy. To date, the role of BAIAP2L1 in ovarian cancer has not been defined.
We report here the first comprehensive study of BAIAP2L1 upregulation in ovarian cancers. Upregulation of BAIAP2L1 in ovarian tumors was first revealed on Clontech Cancer Profiling Array and confirmed with immunohistochemical studies. Public domain datasets were used to validate that the expression of BAIAP2L1 is significantly higher in ovarian cancer than normal tissues and other types of cancer. Functional assays in ovarian cancer cells indicate that BAIAP2L1 is involved in promoting cell proliferation and avoiding apoptosis. These results suggest that the upregulation of BAIAP2L1 can be used as a potential biomarker in ovarian cancer.
Material and Methods
Microarray analysis for differentially expressed genes
Oligonucleotide microarrays containing 18861 probes (Compugen Inc., Tel Aviv, Israel) were used to analyze differentially expressed genes between the RNA of human normal ovary (catalog number CR0856, Clontech, CA, USA) and human ovarian tumor (catalog number 64011–1, Clontech, Palo Alto, CA). Procedures of CyDye labeling and scanning were similar to that were previously reported . Among differentially expressed genes between the normal ovary and ovarian tumor, BAIAP2L1 was selected to be further validated. Cancer Profiling Array II membranes (catalog #7847–1, Clontech, Palo Alto, CA) were hybridized with the radiolabeled cDNA probe for BAIAP2L1. The array contains 154 samples of different types of cancer from breast, ovary, rectum, stomach, lung, kidney, bladder, vulva, prostate, uterus, cervix, thyroid gland, testis, skin, small intestine, pancreas, trachea, and liver (S1 Fig).
Immunohistochemical analysis of clinical tumor tissues
Formalin-fixed paraffin-embedded (FFPE) tumor tissues of ovarian cancer were obtained from Chang Gung Memorial Hospital. Clinical information of the patients was archived in the databank of the Gynecologic Cancer Research Center, Chang Gung Memorial Hospital, Taiwan. The study was approved by the Institutional Review Board of the Chang Gung Memorial Hospital (IRB No.95-1328B). Written informed consent from the donor or the next of kin was obtained for the use of this sample in research. Commercially available tissue arrays included: FDA805-1and 805–2 (S1 Tables) (US Biomax. Inc, Rockville, MD, USA), BC 111109, BC 111110, and OV8011-2-BX (S2 Tables) (US Biomax. Inc, Rockville, MD, USA).
FFPE tissue slides (ovarian cancer and normal ovary, each 4-mm thick) were deparaffinized in xylene and rehydrated in decreasing concentrations of ethanol. The sections were immunostained with an anti- BAIAP2L1 antibody at 1:1000 dilution by using the Bond-Max automated immunohistochemical stainer (Leica, Germany). The overall immunohistochemical score (histoscore) in this study was the percentage of positive cells multiplied by its staining intensity (0 = negative, 1 = weak, 2 = moderate, 3 = strong), and ranged from 0 to 300 (100% multiplied by 3) [26,27].
Culture and treatment of cell lines
Human ovarian cancer cell lines (TOV112D, TOV-21G, SKOV3, MDAH2774), lung fibroblast cells (HFL1), and normal aorta smooth muscle cells (T/G HA-VSMC) were obtained from the American Type Culture Collection (Manassas, VA, USA). TOV112D, TOV-21G, SKOV3, MDAH2774, and HFL1 were cultured in DMEM/F12 with 10% fetal bovine serum and appropriate amounts of penicillin and streptomycin at 37°C with 5% CO2. T/G HA-VSMC cells were cultured in DMEM/F12 with 10% fetal bovine serum, 0.05% mg/ml ascorbic acid, 0.01 mg/ml insulin, 0.01 mg/ml transferrin, 10 ng/ml sodium selenite, and 0.03 mg/ml endothelial cell growth supplement. For apoptosis analysis, cells transfected with BAIAP2L1 siRNA were either irradiated with UV (100 J/M2) or treated with 10 μM cisplatin (Fresenius Kabi, NC, USA) for 24 hrs before analysis.
Transfection of small interfering (si) RNA
MDAH2774 and SKOV3 (8000 and 4000 cells, respectively, in 96-well plates) were transfected with 1 picomole of small interfering-BAIAP2L1 (CCCGAATTCACAAAGGGTAAATAAT, Invitrogen, Carlsbad, CA) in Lipofectamine RNAimax (Invitrogen, Carlsbad, CA) according to the manufacturer’s protocol. After 48 h of transfection, suppression of targeted genes was confirmed by western blot analyses.
RNA extraction and real-time Q-PCR
Total RNA was isolated with TRIzol reagent (Invitrogen, Carlsbad, CA). For RT-QPCR, first strand cDNA was synthesized with an oligo-T primer using superscript III first strand synthesis kit (Invitrogen, Carlsbad, CA). The expression level of BAIAP2L1 (forward primer: CACCCGACTACTTGGAATGCT, reverse primer: CGTTGGCATCGTTAGGAGC) were quantified using SYBR Green assay (Applied Biosystems). Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) expression (forward primer: 5’-GGTATCGTGGAAGGACTCATGAC-3’, reverse primer: 5’-ATGCCAGTGAGCTTCCCGT-3’) was used as internal control. The thermocycles were as follow: initial denaturation at 95°C for 10 min, followed by 45 cycles of 95°C for 15 s and 60°C for 1 min. The reactions were performed in the ABI PRISM 7900 HT instrument (Applied Biosystems). Calculations were done with the mean cycle of threshold (Ct) value for each duplicate measurements.
Western blot analysis
Cells were lysed in ice-cold radioimmunoprecipitation assay lysis buffer [1% Triton X-100, 1% NP-40, 0.1% SDS, 0.5% DOC, 20 mM Tris-hydroxymethyl-aminomethane (Tris-HCl, pH 7.4), 150 mM NaCl, protease inhibitors (Sigma, St. Louis, MO, USA), and phosphatase inhibitors (Sigma, St Louis, MO, USA)] for 30 minutes. Following electrophoretic separation on 13% sodium dodecyl sulfate-polyacrylamide gels, the proteins on gels were transferred to nitrocellulose membranes (Amersham Pharmacia Biotech, Uppsala, Sweden). Protein samples were analyzed using anti-BAIAP2L1 (Abnova, Taipei, Taiwan), anti-cleaved caspase 3 (Cell Signaling Technology, Danvers, MA, USA), anti-PARP (Cell Signaling Technology, Danvers, MA, USA) and anti-actin (Santa Cruz Biotechnology, Santa Cruz, CA) as primary antibodies, and corresponding horseradish peroxidase-conjugated secondary antibodies (Santa Cruz Biotechnology, Santa Cruz, CA). Labeled proteins were subsequently detected by enhanced chemiluminescence (ECL, Millipore, and Bradford, MA, USA). For each sample, band intensities were normalized to β-actin.
Cell viability assay
After knockdown of endogenous BAIAP2L1 expression with siRNA for 48 h, cell proliferation activity was measured with 3-(4,5-Dimethylthiazol-2-yl)-2,5 Diphenyltetrazolium (MTT) method (Sigma, M5655-1G). MDAH2774 and SKOV3 cells were plated at 8000 and 4000 cells/well, respectively, in 96-well plates. Working concentration of MTT solution was 1 mg/ml. Optical density was measured using VICTOR2 Scanning multi-well spectrophotometer with the absorbance at 570 nm. For BrdU assay, the BAIAP2L1 knockdown ovarian cancer cells were incubated with BrdU for 6 h. DNA synthesis activity was assayed using BrdU ELISA kit (Roche Applied Science) as previously described .
Detection of gene fusion between FGFR and BAIAP2L1
The total RNA was extracted from 8 freshly frozen ovarian cancer tissues with protocols that were previously reported . Detection of FGFR3-BAIAP2L1 fusion gene was performed with KAPA2G fast PCR kits (Kapabiosystem, Wilmington, MA) in the following conditions: 95°C for 3 min, followed by 35 cycles of 95°C for 30 sec, 53°C for 30 sec and 72°C for 30 sec, and ended at 72°C for 10 min. The PCR primers were previously reported . The RNA of bladder cancer SW780 cells was used as a positive control for detecting the FGFR3-BAIAP2L1 fusion gene .
Data analysis of microarrays in publically available databases
Data with the series number GSE14407 , GSE2109, and GSE36133  were retrieved from Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/projects/geo/). Expression analysis was performed using Affymetrix Expression Console (Affymetrix, Santa Clara, CA).
The results of in vitro studies are derived from at least three independent experiments and analyzed with two-tailed t-tests. The differences in the histoscores between two groups were compared using the student T test. Two-tailed P-values < 0.05 were considered significant. Statistical analyses were performed with the SPSS statistical software, version 17.0 (SPSS Inc, Chicago, IL, USA).
Ovarian cancers express higher levels of BAIAP2L1 than other cancers
The 10 ovarian tumors specimens studied comprised of 6 malignant cancers, 2 borderline serous cystadenoma (coordinate #E and N), and 2 leiomyoma (coordinates #F and J) (Fig 1A). Other gynecologic cancer and normal tissues of uterine and cervical origins were also determined. In all three tissue types, BAIAP2L1 expression levels in tumor tissues were significantly higher than normal tissues. Similarly, mRNA expression of BAIAP2L1 in ovarian cancer cell lines was higher than normal cell lines (Fig 1B). In agreement with RNA expression results, BAIAP2L1 protein expression is higher in ovarian cancer than in normal tissues, as shown in FDA805-1and 805–2 tissue arrays (Fig 2).
(A) The Cancer Profiling Array II (BD Clontech) of cDNA derived from normal tissues (N) and tumor tissues (T) of ovary, uterus, and cervix. Quantitation of the mRNA of tumor and normal tissues of different sites are shown at the right panel. BAIAP2L1 expression in tumors was significantly higher than that in normal tissues (** P<0.01). (B) BAIAP2L1 RNA expression in ovarian cancer cell lines was higher than normal cell lines. Ovarian cancer lines included serous type (SKOV3), endometrioid type (TOV112D, MDAH2774), and clear cell type (TOV21G). HFL1 is human normal lung fibroblast cell, and T/G HA-VSMC is human normal aorta smooth muscle cells. Abbreviations: T, tumor; N, normal.
Results were derived from commercially available tissue arrays FDA805-1and 805–2, containing normal organs and corresponding tumors (S2 Tables). Number in parentheses denotes the number of cases in the tissue arrays. The overall immunohistochemical score (histoscore) was the percentage of positive cells multiplied by its staining intensity (0 = negative, 1 = weak, 2 = moderate, 3 = strong), and ranged from 0 to 300 (100% multiplied by 3).
Metastasized ovarian cancer tissues express higher BAIAP2L1 than primary cancer
Protein levels of BAIAP2L1 in 193 ovarian cancer tissues, containing serous, endometrioid, clear cell, and mucinous cell types were analyzed (Fig 3). Expression levels of BAIAP2L1 were not different among various cell types of ovarian cancer, stage and grade of each histologic subtype, but each type of ovarian cancer expressed significantly higher BAIAP2L1 than normal ovarian tissues (Fig 3). Expression of BAIAP2L1 was further analyzed in 14 paired samples of primary ovarian cancers and their corresponding metastatic sites (S3 Tables). The metastatic sites include omentum (n = 7), lymph node (n = 3), parametrium (n = 1), small bowel (n = 1), cecum (n = 1), and brain (n = 1). Twelve of the 14 pairs had higher BAIAP2L1 expressions in the metastatic sites than in primary tumors (p < 0.05) (Fig 4).
Immunohistochemical studies were performed on ovarian cancer tissues (n = 193) and normal controls (n = 20). Upper panel indicates the immunohistochemical staining intensity (0 = negative, 1 = weak, 2 = moderate, 3 = strong). The overall immunohistochemical score (histoscore) was the percentage of positive cells multiplied by its staining intensity, and ranged from 0 to 300 (100% multiplied by 3).
Multiple, independent data sets validate up-regulation of BAIAP2L1 in ovarian cancer
Data in GSE14407 data set  indicated that BAIAP2L1 mRNA expression was significantly higher in ovarian cancer epithelial cells (CEPI, 11.8 ± 0.28 shown as mean ± standard error) than in normal ovarian surface epithelia (OSE, 10.8 ± 0.22) (p = 0.004) (Fig 5A). In the tissue expression level, GSE36133 data set showed that BAIAP2L1 was significantly higher in 182 primary ovarian and fallopian tubal cancers (10.4 ± 0.09) compared to 1680 primary cancers mostly from breast, colon, rectum, endometrium, lung, and kidney (9.8 ± 0.04) (p = 4.5 x 10−7) (Fig 5B). GSE2109 data set  further revealed that BAIAP2L1 was significantly higher in 49 ovarian cancer cell lines (9.4 ± 0.17) than 972 cancer cell lines derived from other tissues (8.6 ± 0.07) (p = 0.004) (Fig 5C).
(A) The mRNA expression levels of BAIAP2L1 in ovarian cancer epithelial cells (CEPI) isolated from12 ovarian serous adenocarcinoma and ovarian surface epithelium (OSE) from 12 normal human ovaries. Data are retrieved from GSE14407. (B) The expression levels of BAIAP2L1 in tissues of ovarian cancer (OV, n = 182) and cancer of other primary sites (n = 1680). Data are retrieved from GSE36133. (C) The expression levels of BAIAP2L1 in cell lines of ovarian cancer (OV, n = 49) and other origins (n = 972). Data are retrieved from GSE2109.
Absence of gene fusion between FGFR and BAIAP2L1 in ovarian cancer
None of 8 tested ovarian cancer RNA contained the transcript of fusion gene between FGFR and BAIAP2L1, while the RNA of bladder cancer SW780 cells expressed transcripts of the fusion gene (S2 Fig).
BAIAP2L1 not only promotes cell proliferation but also prevents apoptosis in ovarian cancer cells
Since BAIAP2L1 has been shown to promote cell proliferation in hepatocellular carcinoma (HCC) , we also tested the role of BAIAP2L1 in cell growth of ovarian cancer cells. Knockdown of BAIAP2L1 with (Fig 6A) siRNA technology inhibited cell growth in multiple ovarian cancer cell lines, shown in results of BrDU incorporation assays (Fig 6B) and MTT assays (Fig 6C).
BAIAP2L1 in two ovarian cancer cell lines (MDAH2774 and SKOV3) were knockdowned with si-RNA (A) and analyzed with (B) BrdU incorportation assay and (C) MTT assay. (D) BAIAP2L1 knockdown in SKOV3 cells increased cleavage of caspase 3 and PARP, which were indicators of apoptosis. The cells were irradiated with UV (100 J/M2) or treated with 10 μM cisplatin for 24 h to induce apoptosis. To clearly visualize the differential intensities of cleaved PARP bands, two exposure times were used during chemiluminescence: long (60 sec) and short (10 sec). The actin level was used to normalize the amount of input protein. (E) Quantitative analyses of cleaved caspase 3 and PARP. Results shown are the mean ± standard error from three independent experiments. Asterisks denote statistical significance (p < 0.05).
In apoptosis pathways, pro-caspase 3 is activated and cleaved into 17-kDa and 12-kDa fragments, and then proteolytic enzyme digests downstream proteins, such as poly (ADP-ribose) polymerase (PARP) . Without DNA insults (UV or cisplatin), knockdown of BAIAP2L1 alone slightly increased cleaved PARP levels (Fig 6D and 6E). After UV irradiation or cisplatin treatment for 24 h, knockdown of BAIAP2L1 increased protein level of cleaved caspase 3 and cleaved PARP. These results suggest that BAIAP2L1 may protect cells from apoptosis.
BAIAP2L1 expression has been shown to increase in hepatocellular carcinoma . In this study, integrative database analyses of BAIAP2L1 in GSE14407 and GSE36133 cancer tissues as well as GSE2109 cell lines validate our immunohistochemical results of high BAIAP2L1 expression in ovarian cancers. These results indicate, for the first time, that BAIAP2L1 is upregulated in human ovarian cancers, accounting for increased cell proliferation and resistance to apoptosis of ovarian cancer.
Our findings that BAIAP2L1 histoscores of metastatic sites are higher than primary ovarian cancers suggest that BAIAP2L1 may contribute to tumor invasion and metastasis. These results are in agreement with the findings that BAIAP2L1 is involved in plasma membrane deformation and actin cytoskeleton remodeling, which are important for cell migration . Although oncogenic FGF receptor 3 (FGFR3)-BAIAP2L1 fusion gene has been identified in bladder cancers  and lung cancers , we could not detect the transcript of fusion genes of BAIAP2L1 in this study of a limited number of specimens. The presence of FGFR-BAIAP2L1 gene fusion has been shown to translate a larger protein in other cancers , but we identified BAIP2L1 only as a single band of 57 kD on western blot analysis of ovarian cancer cells, ruling out the presence of FGFR-BAIAP2L1 gene fusion.
BAIAP2L1 has also been shown in the disease progression of rheumatoid arthritis, where BAIAP2L1 expression in fibroblast-like synovial cells was positively correlated with C-reactive protein (CRP), a common clinical marker for inflammation . CRP levels have been shown to predict survival in patients with renal cell carcinoma, bladder cancers, and prostate cancer, and the incorporation of CRP into prognostic models for those cancers improves the models' predictive accuracy . These findings collectively support that BAIAP2L1 is involved in inflammation and tumorigenesis in general .
The most conclusive functions of BAIAP2L1 in mammals have been recently revealed by Han’s group using a knockout mouse approach . BAIAP2L1 acts as an insulin receptor (IR) adaptor that activates the IR-IRS1/2 (insulin receptor substrate 1/2)-AKT signaling pathway via stimulating tyrosine phosphorylation of IR. BAIAP2L1-deficient mice displayed insulin resistance and abnormal glucose homeostasis . Furthermore, hepatic expression of BAIAP2L1 was decreased in mice and humans with type 2 diabetes, suggesting an association between BAIAP2L1 downregulation and the development of diabetes. Interestingly, the hepatic decrease of BAIAP2L1 in diabetic patients seemed to have a male-female discrepancy, which the authors postulated to be caused by insufficient sample sizes . In light of a genome-wide association study where BAIAP2L1 is highly associated with circulating levels of sex hormone-binding globulin , a sex dependent regulation of BAIAP2L1 functions remains worthy studying.
In addition to actin-related functions of BAIAP2L1, which are mainly elucidated from bacterial studies [16,17,18,19], the discovery of BAIAP2L1 in the IR-IRS-AKT pathways may shed light to its role in cancer-specific metabolism. To provide building blocks for tumor growth, cancer cells increase fatty acid synthesis and glutamine metabolism, at the expense of using inefficient aerobic glycolysis . The concentrations of glucose in solid tumors are generally lower than normal tissues , thus cancer cells often crave glucose and glutamine . Future studies may prove that BAIAP2L1 is involved in getting more glucose entry to cancer cells, perhaps by increasing the efficiency of Glut transporters. In addition, several downstream effectors of IR include (i) MAPKs that are known to promote cell proliferation  and (ii) PI-3K that increases synthesis of proteins and fatty acids and prevent cancer cells from apoptosis .
Results of this study not only indicate that BAIAP2L1 can be used as a biomarker for human ovarian cancer but also reveal its role in cancer biology. Clinical studies with large numbers of samples and quantitative assays will be necessary to validate the usefulness of BAIAP2L1 in clinical practice. Further elucidation of the role of BAIAP2L1 in context of the IR-IRS-downstream effectors pathways of cancer cells is warranted for developing cancer therapeutics targeting cancer-specific metabolism.
S1 Fig. The mRNA profiles of BAIAP2L1 on tissues and cell lines.
S2 Fig. Absence of fusion gene between FGFR3 and BAIAP2L1.
S1 Tables. FDA tissue arrays (805–1 and 2) and histoscores of BAIAP2L1.
S2 Tables. Tissue arrays (BC 111109, BC 111110, and OV8011-2-BX) and histoscores of BAIAP2L1.
The authors thank the Tumor Bank, Chang Gung Memorial Hospital and Jung-Erh Yang for her excellent technical assistance. We thank Dr. Su-Fang Lin of National Health Research Institutes (Miaoli, Taiwan) for providing total RNA of SW780 cells and Dr. Shihtien T. Wang (Department of Pediatric Nephrology, Children’s Hospital, University of Illinois Medical School at Chicago) for English editing. This study was supported by Chang Gung Medical Foundation: CMRPG3E0391 (Chao A), CMRPG3C1621-2 (Tsai CL), CMRPG3C0281-3, CMRPG3C0941-2 and CRRPG3D0031 (Wang TH).
Conceived and designed the experiments: AC THW. Performed the experiments: CLT WCC CK AH SHC CYL YCL. Analyzed the data: AC YSL THW. Wrote the paper: AC CLT THW. Gathered the data: AC WCC YCL YSL HSW CHL. Reviewed pathological results: SMJ.
- 1. Jemal A, Bray F, Center MM, Ferlay J, Ward E, Forman D (2011) Global cancer statistics. CA Cancer J Clin 61: 69–90. pmid:21296855
- 2. (2007) Department of Health, the Executive Yuan. Cancer registration annual report in Taiwan.
- 3. Chan JK, Cheung MK, Husain A, Teng NN, West D, Whittemore AS, et al. (2006) Patterns and progress in ovarian cancer over 14 years. Obstet Gynecol 108: 521–528. pmid:16946210
- 4. Engel J, Eckel R, Schubert-Fritschle G, Kerr J, Kuhn W, Diebold J, et al. (2002) Moderate progress for ovarian cancer in the last 20 years: prolongation of survival, but no improvement in the cure rate. Eur J Cancer 38: 2435–2445. pmid:12460789
- 5. Coleman RL, Monk BJ, Sood AK, Herzog TJ (2013) Latest research and treatment of advanced-stage epithelial ovarian cancer. Nat Rev Clin Oncol 10: 211–224. pmid:23381004
- 6. Bast RC Jr., Feeney M, Lazarus H, Nadler LM, Colvin RB, Knapp RC (1981) Reactivity of a monoclonal antibody with human ovarian carcinoma. J Clin Invest 68: 1331–1337. pmid:7028788
- 7. Van Calster B, Timmerman D, Bourne T, Testa AC, Van Holsbeke C, Domali E, et al. (2007) Discrimination between benign and malignant adnexal masses by specialist ultrasound examination versus serum CA-125. J Natl Cancer Inst 99: 1706–1714. pmid:18000221
- 8. Bast RC Jr., Klug TL, St John E, Jenison E, Niloff JM, Lazarus H, et al. (1983) A radioimmunoassay using a monoclonal antibody to monitor the course of epithelial ovarian cancer. N Engl J Med 309: 883–887. pmid:6310399
- 9. Jacobs I, Bast RC Jr. (1989) The CA 125 tumour-associated antigen: a review of the literature. Hum Reprod 4: 1–12.
- 10. Hu RM, Han ZG, Song HD, Peng YD, Huang QH, Ren SX, et al. (2000) Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. Proc Natl Acad Sci U S A 97: 9543–9548. pmid:10931946
- 11. Yamagishi A, Masuda M, Ohki T, Onishi H, Mochizuki N (2004) A novel actin bundling/filopodium-forming domain conserved in insulin receptor tyrosine kinase substrate p53 and missing in metastasis protein. J Biol Chem 279: 14929–14936. pmid:14752106
- 12. Scita G, Confalonieri S, Lappalainen P, Suetsugu S (2008) IRSp53: crossing the road of membrane and actin dynamics in the formation of membrane protrusions. Trends Cell Biol 18: 52–60. pmid:18215522
- 13. Peter BJ, Kent HM, Mills IG, Vallis Y, Butler PJ, Evans PR, et al. (2004) BAR domains as sensors of membrane curvature: the amphiphysin BAR structure. Science 303: 495–499. pmid:14645856
- 14. Aitio O, Hellman M, Kazlauskas A, Vingadassalom DF, Leong JM, Saksela K, et al. (2010) Recognition of tandem PxxP motifs as a unique Src homology 3-binding mode triggers pathogen-driven actin assembly. Proc Natl Acad Sci U S A.
- 15. Millard TH, Dawson J, Machesky LM (2007) Characterisation of IRTKS, a novel IRSp53/MIM family actin regulator with distinct filament bundling properties. J Cell Sci 120: 1663–1672. pmid:17430976
- 16. Yi CR, Goldberg MB (2009) Enterohemorrhagic Escherichia coli raises the I-BAR. Proc Natl Acad Sci U S A 106: 6431–6432. pmid:19380713
- 17. Vingadassalom D, Kazlauskas A, Skehan B, Cheng HC, Magoun L, Robbins D, et al. (2009) Insulin receptor tyrosine kinase substrate links the E. coli O157:H7 actin assembly effectors Tir and EspF(U) during pedestal formation. Proc Natl Acad Sci U S A 106: 6754–6759. pmid:19366662
- 18. de Groot JC, Schluter K, Carius Y, Quedenau C, Vingadassalom D, Faix J, et al. (2011) Structural basis for complex formation between human IRSp53 and the translocated intimin receptor Tir of enterohemorrhagic E. coli. Structure 19: 1294–1306. pmid:21893288
- 19. Aitio O, Hellman M, Skehan B, Kesti T, Leong JM, Saksela K, et al. (2012) Enterohaemorrhagic Escherichia coli exploits a tryptophan switch to hijack host f-actin assembly. Structure 20: 1692–1703. pmid:22921828
- 20. Chen G, Li T, Zhang L, Yi M, Chen F, Wang Z, et al. (2011) Src-stimulated IRTKS phosphorylation enhances cell migration. FEBS Lett 585: 2972–2978. pmid:21840312
- 21. Wang KS, Chen G, Shen HL, Li TT, Chen F, Wang QW, et al. (2011) Insulin receptor tyrosine kinase substrate enhances low levels of MDM2-mediated p53 ubiquitination. PLoS One 6: e23571. pmid:21887275
- 22. Wang YP, Huang LY, Sun WM, Zhang ZZ, Fang JZ, Wei BF, et al. (2013) Insulin receptor tyrosine kinase substrate activates EGFR/ERK signalling pathway and promotes cell proliferation of hepatocellular carcinoma. Cancer Lett 337: 96–106. pmid:23693078
- 23. Williams SV, Hurst CD, Knowles MA (2013) Oncogenic FGFR3 gene fusions in bladder cancer. Hum Mol Genet 22: 795–803. pmid:23175443
- 24. Nakanishi Y, Akiyama N, Tsukaguchi T, Fujii T, Satoh Y, Ishii N, et al. (2015) Mechanism of Oncogenic Signal Activation by the Novel Fusion Kinase FGFR3-BAIAP2L1. Mol Cancer Ther 14: 704–712. pmid:25589496
- 25. Chao A, Wang TH, Lee YS, Hong JH, Tsai CN, Chen CK, et al. (2008) Analysis of functional groups of differentially expressed genes in the peripheral blood of patients with cervical cancer undergoing concurrent chemoradiation treatment. Radiat Res 169: 76–86. pmid:18159954
- 26. Chao A, Lai CH, Tsai CL, Hsueh S, Hsueh C, Lin CY, et al. (2013) Tumor stress-induced phosphoprotein1 (STIP1) as a prognostic biomarker in ovarian cancer. PLoS One 8: e57084. pmid:23468915
- 27. Wang TH, Chao A, Tsai CL, Chang CL, Chen SH, Lee YS, et al. (2010) Stress-induced phosphoprotein 1 as a secreted biomarker for human ovarian cancer promotes cancer cell proliferation. Mol Cell Proteomics 9: 1873–1884. pmid:20501939
- 28. Chao A, Wang TH, Lee YS, Hsueh S, Chao AS, Chang TC, et al. (2006) Molecular characterization of adenocarcinoma and squamous carcinoma of the uterine cervix using microarray analysis of gene expression. Int J Cancer 119: 91–98. pmid:16450401
- 29. Bowen NJ, Walker LD, Matyunina LV, Logani S, Totten KA, Benigno BB, et al. (2009) Gene expression profiling supports the hypothesis that human ovarian surface epithelia are multipotent and capable of serving as ovarian cancer initiating cells. BMC Med Genomics 2: 71. pmid:20040092
- 30. Barretina J, Caponigro G, Stransky N, Venkatesan K, Margolin AA, Kim S, et al. (2012) The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity. Nature 483: 603–607. pmid:22460905
- 31. D'Amours D, Sallmann FR, Dixit VM, Poirier GG (2001) Gain-of-function of poly(ADP-ribose) polymerase-1 upon cleavage by apoptotic proteases: implications for apoptosis. J Cell Sci 114: 3771–3778. pmid:11707529
- 32. Galligan CL, Baig E, Bykerk V, Keystone EC, Fish EN (2007) Distinctive gene expression signatures in rheumatoid arthritis synovial tissue fibroblast cells: correlates with disease activity. Genes Immun 8: 480–491. pmid:17568789
- 33. Saito K, Kihara K (2011) C-reactive protein as a biomarker for urological cancers. Nat Rev Urol 8: 659–666. pmid:22025173
- 34. Elinav E, Nowarski R, Thaiss CA, Hu B, Jin C, Flavell RA (2013) Inflammation-induced cancer: crosstalk between tumours, immune cells and microorganisms. Nat Rev Cancer 13: 759–771. pmid:24154716
- 35. Huang LY, Wang YP, Wei BF, Yang J, Wang JQ, Wu BH, et al. (2013) Deficiency of IRTKS as an adaptor of insulin receptor leads to insulin resistance. Cell Res 23: 1310–1321. pmid:23896986
- 36. Coviello AD, Haring R, Wellons M, Vaidya D, Lehtimaki T, Keildson S, et al. (2012) A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation. PLoS Genet 8: e1002805. pmid:22829776
- 37. Zhao Y, Butler EB, Tan M (2013) Targeting cellular metabolism to improve cancer therapeutics. Cell Death Dis 4: e532. pmid:23470539
- 38. Birsoy K, Possemato R, Lorbeer FK, Bayraktar EC, Thiru P, Yucel B, et al. (2014) Metabolic determinants of cancer cell sensitivity to glucose limitation and biguanides. Nature 508: 108–112. pmid:24670634
- 39. Cantor JR, Sabatini DM (2012) Cancer cell metabolism: one hallmark, many faces. Cancer Discov 2: 881–898. pmid:23009760
- 40. Fruman DA, Rommel C (2014) PI3K and cancer: lessons, challenges and opportunities. Nat Rev Drug Discov 13: 140–156. pmid:24481312