Chlorella vulgaris, is a kind of single-celled green algae, which could serve as a potential source of food and energy because of its photosynthetic efficiency. In our study, a pathogenic organism targeting C. vulgaris was discovered. The algae-lytic activity relates to a fraction from lysates of infected C. vulgaris that was blocked upon filtration through a 3 µm filter. 18S rRNA gene sequence analysis revealed that it shared 99.0% homology with the protist Pseudobodo tremulans. Scanning electron microscope analysis showed that Pseudobodo sp. KD51 cells were approximately 4–5 µm long, biflagellate with an anterior collar around the anterior part of the cell in unstressed feeding cells. Besides the initial host, Pseudobodo sp. KD51 could also kill other algae, indicating its relatively wide predatory spectrum. Heat stability, pH and salinity tolerance experiments were conducted to understand their effects on its predatory activities, and the results showed that Pseudobodo sp. KD51 was heat-sensitive, and pH and salinity tolerant.
Citation: Chen Z, Lei X, Zhang B, Yang L, Zhang H, Zhang J, et al. (2014) First Report of Pseudobodo sp, a New Pathogen for a Potential Energy-Producing Algae: Chlorella vulgaris Cultures. PLoS ONE 9(3): e89571. https://doi.org/10.1371/journal.pone.0089571
Editor: Douglas Andrew Campbell, Mount Allison University, Canada
Received: September 28, 2013; Accepted: January 21, 2014; Published: March 5, 2014
Copyright: © 2014 Chen et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Funding: This work was financially supported by the National Nature Science Foundation of China (41376119, 40930847), public science and technology research funds projects of ocean (201305016, 201305022) and science and technology innovation funds of Shenzhen (JCYJ20120615161239998). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Competing interests: The authors have declared that no competing interests exist.
Chlorella vulgaris, a spherical single-celled freshwater alga, is widespread and is an efficient photosynthetic plant. It is highly favored for its high content of protein, vitamins, minerals, dietary fiber, nucleic acid, chlorophyll and other essential materials , . Driven by the increasing price of petroleum-based fuels and growing concern about global warming, biofuels have aroused public attention . Algal fuel or algal biofuel using algae as its source of natural deposits is an alternative to fossil fuel . Hence, C. vulgaris not only plays an important role in aquatic ecology, but also has potential as an energy resource.
However, there are many factors that can affect the in situ growth of C. vulgaris , especially biotic factors , , , , which may result in a diminished output. In fact, the relationship between algae and other microorganisms including actinomycetes , , , viruses ,  and bacteria  have been studied for decades. However, there was less literature about predatory-prey interactions between protists and algae. In many reports, harmful algae bloom regulation utilizing the special interactions revealed that protists may be a potential tool to control the harmful algae bloom , , , , . However, unlike those red-tide species, C.vulgaris is a potentially valuable algae but there are no reports about the relationship between protists and C. vulgaris. We hope this study could provide a satisfactory basis to review the adverse factors for the growth of beneficial algae and then to look for methods to reduce these adverse effects to better serve for us.
The bicosoecids (Bicosoecea) are a small group of unicellular flagellates, included among the heterokonts in the kingdom Chromista . The cells are free-living, with no chloroplasts, and in some genera are encased in a lorica. The Bicosoecida is an order of unicellular marine flagellates that have for the most part been poorly studied. Bicosoecids consume bacteria in the oceanic environment and may have a direct effect on deep-sea marine fluxes of nutrients . While research continues on these organisms, much remains unknown about bicosoecids and other deep-water nanoflagellates . Up to now, there are five genera in the family Bicosoecea; these are Bicosoeca, Cafeteria, Pseudobodo, Siluania and Symbiomonas. However, there is still little information about the last three genera. Some bicosoecid genera have been identified for decades, while some, especially the genus Cafeteria, have only recently been discovered. The genus was created after the discovery of a new species Cafeteria roenbergensis, a tiny (5–10 µm) eukaryotic organism that is eaten by protozoa and small invertebrates . The name is meant to indicate the importance of the genus in the food web.
Another bicosoecid species is Pseudobodo tremulans, also a marine flagellate found mainly in sediments. At first, only loricate, sedentary flagellates of the genus Bicosoeca ( = Bicoeca) have been considered members of the group . P. tremulans (Griessmann, 1913) Fenchel, 1982 is the first nonloricate flagellate to be referred to the bicosoecids . The brief report of its ultrastructure contains few details, and few molecular sequences about Pseudobodo sp. data are available. Currently, there are no other reported species of Pseudobodo sp except P.tremulans and consequently, the relationships of this genus and other microorganisms are not well understood. The absence of ultrastructural and molecular data for many species belonging to, or thought to be related to, the bicosoecids has prevented a better understanding of bicosoecid taxonomy and phylogeny . In this study, Pseudobodo sp., a new pathogen of C. vulgaris, was discovered and this study would be the first report concerning the relationship between the protist Pseudobodo and the eukaryotic alga C. vulgaris.
Materials and Methods
Algal cultures and growth conditions
The axenic clonal strain of C. vulgaris was cultured in f/2 medium (75 mg NaNO3, 5 mg NaH2PO4•H2O, 4.36 mg Na2EDTA•2H2O, 3.15 mg FeCl3•6H2O, 0.01 mg CoCl2•6H2O, 0.18 mg MnCl2•4H2O, 0.006 mg NaMoO4•2H2O, 0.1 mg Thiamine•HCl, 0.5 µg Vitamin B12, 0.5 µg Biotin, in 1 L seawater)  prepared with 0.45 µm of filtered seawater) at 20±1°C under a 12/12-h light-dark cycle of approximately 50 µmol of photons m−2s−1.
Isolation of a predatory microbes
Water samples (0.5 m below the surface) in an algal bloom were collected from Xiamen sea of China on 1 August 2011. No specific permissions were required for these locations/activities, as Xiamen sea is a open sea area, not the private territory. We often collect samples from here when needed. The field studies related with the water sample collection did not involve endangered or protected species. The samples were immediately filtered through a 5-µm-pore-size filter, to remove large eukaryotic microorganisms. Then the treated samples were stored at 4°C for further analysis, which involved in 5 mL of the supernatant being inoculated into an exponentially growing C. vulgaris culture (25 mL) and incubated at 20°C using the same lighting conditions as mentioned above. Algal cultures inoculated with supernatant inactivated at 121°C served as controls. After C. vulgaris was inoculated with the water samples for about 14 days, the color of C. vulgaris had changed to be transparent and apparent aggregation of host formed at the bottom and the lysate of C.vulgaris had relatively stable alga-lytic activity. The responsible pathogen in the lysate was tested and purified through two extinction dilution cycles  and plaque assay procedure . The dilution cycles were that, in brief, the algal lysate was diluted in modified f/2 medium in a series of 10-fold dilution steps. Aliquots (1 mL) of each dilution step were added to a test tube containing 4 mL of an exponentially growing C.vulgaris. Then, the algal lysate in the most dilution in the first assay was carried over to the second extinction dilution procedure. Lastly, the resultant lysate in the final endpoint dilution was used as a clonal lysate. As for plaque assay procedure, 4 mL of the upper medium (f/2+0.7% agar) with the addtion of 100 µL lysate and 1 mL C.vulgaris, were poured onto the lower medium (f/2+1.2% agar) which were adjusted to about 55°C before use. The formed single plaques were picked up and resuspended in f/2 overnight. Thereafter, 100 µL of suspension and 1 mL C.vulgaris together with 4 mL of the upper medium were again poured onto the lower medium. Pure pathogen were established by repeating the two methods several times.
To check whether the microbes in the lysate were viruses, bacteria or protists, and to determine the alga-lytic pattern, the lysate was filtered through 5, 3, 1, 0.45 and 0.2 µm-pore-size filter membrane. This is done to prepare for the determination of chlorophyll a content which could reflect the living mass. Then the supernatant (2 mL) was added into the exponentially growing host C. vulgaris (20 mL) while cultures inoculated with unfiltered lysate and f/2 served as the control. All tests had three replicates. After 7 days, all the cultures were centrifuged at 8,000×g at 4°C for 10 min. The supernatant was discarded, and the pellet was resuspended in 5 mL of 90% ethanol, mixed thoroughly on a vortex mixer and then rested overnight. After extraction, the pellet was removed by using centrifugation. The absorbance of the extracts was then measured at 664, 645, and 630 nm using a 50 Bio UV-Visible spectrophotometer (ELO71139140, Varian Australia Pty Ltd, Australia). Chlorophyll a concentration was calculated using the formula: Chlorophyll a (mgL−1) = 11.64A664-2.16A645-0.10A630 where A664, A645, and A630 are the optical densities at the respective wavelengths .
The pathogen was purified by using two extinction dilution cycles and the plaque assay procedure several times. For DNA extraction, the newly-prepared lysate of C.vulgaris that contained Pseudobodo sp. KD51 (30 mL) were centrifuged at 8,000× g at 4°C for 10 min and the supernate was discarded. The precipitate of the subsamples were mixed with 0.5 mL DNA buffer and incubated with 50 µL at 37°C for 1.5 h (50 mM Tris, 20 mM EDTA, 100 mM Na3PO4•H2O, 1.5 M NaCl, 2% CTAB). SDS (10%) was added into the mixture and it was incubated at 65°C for 2.5 h with shaking every 15 min. Then 0.7 M NaCl and 1% CTAB/NaCl were added and the mixture further incubated at 65°C for 15 min. Isometric phenol-chloroform-isoamyl alcohol (25∶24∶1) was added and the phases were mixed gently and then separated by using centrifugation at 12,000× g for 10 min. This step was repeated twice. The aqueous phase was precipitated with isometric chloroform-isoamyl alcohol (24∶1) and collected by using concentrifugation at 12,000× g for 10 min. Afterwards, the mixture was precipitated by 0.5 volume isopropanol at 4°C for at least 1 h. Finally, the pellet was washed with 70% ethanol, dried and dissolved in 10 mM Tris pH 8.0, 1 mM EDTA and 0.1 µg µL−1. The purity of the extracted DNA was assessed spectrophotometrically by calculating the A260/A280 ratio to determine protein impurities.  The DNA was loaded on a 1.0% agarose gel to determine size and concentration.
Polymerase chain reaction (PCR) and phylogeny construction
PCR was carried out in a 25 µL reaction volume containing 12.5 µL of Dream Taq Green PCR Master Mix (Thermo Scientific) and 0.8 µM of each primer from the relevant primer pair. SSU rDNA was amplified using the protozoa-specific primer P-SSU-342f (5′-CTTTCGATGGTAGTGTATTGGACTAC-3′) and the universal eukaryotic primer Medlin-B (5′-TGATCCTTCTGCAGGTTCACCTAC-3′ ) as used by Tan et al., (2013) , which yielded an approximately 1.5 kb portion of the SSU rDNA. The PCR condition for SSU were initial denaturation for 2 min at 94°C, 35 cycles of 45 s at 94°C, 45 s at 50°C, and 90 s at 72°C, and then terminal elongation for 5 min at 72°C. The PCR products were then loaded to 1.5% agarose gel to verify success of the PCR. Purification of the PCR product was carried out following the protocol of the TIANquick Midi purification kit (TIANGEN, China). Sequences of related taxa were downloaded from the GenBank database and the EzTaxon-e server (http://eztaxon-e.ezbiocloud.net/) . Phylogenetic analysis was performed using MEGA version 5  after multiple alignment of data with DNAMAN (version 5.1). Evolutionary distances and clustering were constructed by using the neighbor-joining method . The resulting tree topology was evaluated using bootstrap analysis based on 1000 replicates.
Impact and predatory activity of lysate on C.vulgaris cultures
In order to choose a proper volume ratio for further research, different volume ratios of newly-prepared lysate-C.vulgaris cultures (1∶1, 1∶10, 1∶20, 1∶50, 1∶100, 1∶500) were co-cultured in the 20 mL triangular flask while the C. vulgaris culture inoculated with f/2 under same ratio served as the control. After 9 days, all the cultures were treated as described above to measure the Chlorophyll a concentration. Next, the proper volume of the lysate was added into the exponentially growing host and the Chlorophyll a concentration wasn sequentially measured every day for 9 days to test the predatory activity of lysate on C. vulgaris cultures.
In brief, the lysate were added into the exponentially growing host culture, and a fresh host culture inoculated in f/2 served as the control. An aliquot of cell suspension was sampled on day 5 when apparent infection appeared. Cells were then harvested by using centrifugation at 8,000×g at 4°C for 10 min and fixed with 1% glutaraldehyde for 4 h at 4°C and then washed in 0.1 M phosphate buffer (pH = 7.2), dehydrated through a graded ethanol series (30, 50, 70, 90, 95 and 100%), and embedded in Quetol 812 resin. Scanning electron microscope (SEM) images were taken on a Hitachi S-4800 microscope, operating at 5 kV.
Predation range of Pseudobodo sp. KD51
25 exponentially growing clonal algal species were included to test the host specificity of Pseudobodo sp. KD51 by adding 5% (vol/vol) aliquots of fresh lysate. They were cultured under the conditions mentioned above at 20°C for 14 days. The growth condition of some of the algal species treated with Pseudobodo sp. KD51 were visually observed based on the color change, while other species were monitored by measuring the fluorescence value under a spectrophotometer or observed using optical microscopy.
The standard curve of C.vulgaris numbers
Since the small size of C. vulgaris makes numerical counting under optical microscopy unsuitable, we searched for a convenient and direct way to monitor the change in numbers of C. vulgaris. In our study, we tried to build a standard curve of the numbers of live C. vulgaris cells by integrating the method of fluorescence microscope with SYBGreen as fluorescence stain and fluorescence value determination using by a spectrophotometer (Ex = 440 nm, Em = 680 nm). In brief, the initial maximum concentration of C. vulgaris (fluorescence value = 1122, regarded as “1”) was diluted in the proportions 3/4, 1/2, 3/8, 1/4, 3/16 and 1/8, and then the numbers of live cells in 200 µL of each dilution were assessed by counting, using the described two methods. The datas were analysed further and we found a significant correlation between the two sets. Therefore, we decided to assess the cell numbers directly by measuring the fluorescence value.
Stability of predatory activity
To investigate the effect of heat treatment on predatory activity, the lysate was incubated in a water bath at 20, 25, 30, 35, 40, 45, 50 and 60 for 30 min, while another lysate was autoclaved at 121°C for 30 min. In addition, in order to investigate the effect of pH, the supernatants (initial pH = 7.8) were suspended in 0.1 M citrate phosphate buffer in a pH range of 5.5 to 9.5 for 30 min and then readjusted to the initial pH. The treated supernatants were subsequently inoculated into exponentially growing culture of C.vulgaris, to measure their fluorescence value. C.vulgaris was inoculated with Pseudobodo sp. KD51 salinities (0, 10, 20, 30, 40, 50 and 60‰) to test whether salinities could affect the activity of Pseudobodo sp. KD51. Subsamples of 200 µL were collected to determine the fluorescence value.
Isolation of the predatory pathogen
Filtered seawater (5 mL) was added to the exponentially growing axenic clonal strain C. vulgaris cultures (20 mL) and the same volume of inactivated supernatant served as the control. It was observed that the color of the algal culture changed from green to light yellow, with algae being precipitated at the bottom after 5 days. In order to eliminate any accidental chance, the newly infected lysate was added into the host again. Consequently, the same algal death process was observed (Fig. S1A). Furthermore, plaque-forming assay of the lysate was performed on algal plates, and all plates developed plaques with a range of 2 to 3 mm in diameter (Fig. S1B). By repeating this procedure several times, we believed that we had isolated a pure plaque-forming microbe. We subsequently focused our attention on its biological characteristics.
Size of the pathogen and its alga-lytic mode
The lysate was filtered through different pore-sized membranes and the filtrate was added into the exponentially growing C.vulgaris, while f/2, the straight media with no pathogen served as control. Our results using the filtrates from different-pore sized filter membranes to infect the C. vulgaris revealed that the size of the pathogen was between 3–5 µm, as shown in Fig. 1. Compared with the control group, there was little change in the content of Chlorophyll a among the membrane pore sizes 0.22–3 µm, which meant that C. vulgaris could not be infected by the filtrate through a membrane less than 3 µm. However, both the untreated and 5 µm-sizes filtered samples showed similar predatory effects, which could be reflected in the largely decreased Chlorophyll a content.
The different pore-sized membranes, 0.22 µm, 0.45 µm, 1 µm, 3 µm, 5 µm were used and the legend f/2 meaning straight media with no Pseudobodo sp. KD51 served as the control. C. vulgaris was inoculated with both the control and treatment group for about 8 days, thereafter, the Chlorophyll α was determined. All data were mean± 1.SE (n = 3).
The predatory effect of lysate on C. vulgaris cultures
The samples inoculated with different concentrations of lysate all showed different predatory level and the activities were higher as the concentration of lysate was higher (Fig. 2A). As can be seen, after 8 days of infection, the Chlorophyll a content of the treatment 1∶1 sharply decreased while in fact the vivid death was observed in the 2nd day (Fig. S2). The Chlorophyll a content of 1∶10 decreased largely and the vivid death was observed in the 4th day. There was slightly reduction of Chlorophyll a content for 1∶500 in the last day and there was also no vivid change compared with the control. We then chose the moderate volume ratio (1∶10) for the following study. In order to understand how C. vulgaris reacted to the pathogen, the Chl a content was measured before addition of lysate and for 8 days thereafter. The cultures inoculated with f/2 served as control. In the control, there were almost no vivid changes in the Chlorophyll a content. However, after the inoculation with the lysate, the Chlorophyll a content gradually decreased from 6.5 mg/L (0) to 2.5 mg/L (3rd) and there was slight fluctuation during 3rd and 7th, then decreasing to 1 mg/L at last.
The cultures inoculated with f/2 served as control. All data were mean±1. SE (n = 3). (A). Inoculation of lysate of C.vulgaris with C. vulgaris under different volume ratio for about a week. (B). Inoculation of lysate with C. vulgaris under the ratio 1∶10 and the Chl a content was measured before addition of lysate and for 8 days thereafter.
Molecular data concerning the pathogen
SSU rRNA gene sequences from a wide representation of stramenopile lineages, were analyzed to assess the phylogenetic relationship of Pseudobodo sp. KD51 within this assemblage. Preliminary comparison of the 18S rRNA gene sequence of (1496 bp) Pseudobodo sp. KD51 (KF549664) with other sequences indicated that it was most closely related to the P. tremulans (99%). Sequence similarity between Pseudobodo sp. KD51 and other members of the Bicosoecida were slightly lower (98%). However, distant similarity (≤89%) was seen between Pseudobodo sp. KD51 and members from the Labyrinthulomycetes, such as Oblongichytrium sp. and Thraustochytriidae sp. The related sequences were chosen for phylogenetic tree construction. As shown in Fig. 3, Pseudobodo sp. KD51 only clustered within the Bicosoecida group branch, while other branches mainly consisted of species from the Labyrinthulomycetes.
The tree was constructed using the neighbor-joining method and the MEGA 5.0 program. Bootstrap values above 70% (expressed as percentages of 1000 replications) are given at nodes. The bootstrap values were evaluated from 1,000 replications.
From Fig. 4A, we saw that the Pseudobodo sp. KD51 cells were about 4–5 µm long with an anterior collar around the anterior part of the cell in unstressed feeding cells. The insertion sites of the two flagella were separated by a protrusion at the anterior of the cell (Fig. 4B). The anterior flagellum had a sine-wave beating pattern and was about 3 times the length of the cell, while the posterior flagellum was about twice the length of the cell and became attached to the substrate at its tip. The cells moved by swimming with the anterior flagellum directed forwards (Fig. 4C).
There were two unequal flagella around the feeding cells. The insertion sites of the two flagellae (af and pf) were separated by a protrusion at the anterior of the cell (c). (A) The figure of Pseudobodo sp. KD51 within the lysate of C.vulgaris under lower magnification. (B) and (C) were the magnified image of part in (A), the pf was missing (C) as the reason of sample preparation.The abbreviations: af–anterior flagellum, pf–posterior flagellum, c– cell. Magnification: (A): 2,200×; (B): 9,500×; (C): 8,500×.
Predatory range of Pseudobodo sp. KD51
When the host range of Pseudobodo sp. KD51 was tested using 25 algal species, predatory activity was apparent not only to the host alga C. vulgaris, but also to four other alga, Platymonas subcordiformis, Dunaliella salina and Cyanobacteria sp Microcystis aeruginosa (Table 1). Weak predation activity to Isochrysis galbana and Nannochloropsis oceanica was also detected through calculating the predatory rate. These results indicated the relatively wide predatory spectrum of Pseudobodo sp. KD51.
The standard curve of C.vulgaris numbers
The two sets of data regarding cell numbers were collected and further analyzed. The standard curve was credible (Fig. 5) as it showed a significant correlation (R2 = 0.9922). In brief, the X-axis reflected the numbers of C. vulgaris cells counted using fluorescence microscopy, while the Y-axis reflected the fluorescence value by a spectrophotometer under the conditions as described above. Because the details of sample preparation for fluorescence microscopy were relatively complicated, in the following study we directly measured the fluorescence value using a spectrophotometer.
The initial C.vulgaris cells were diluted to different proportion 3/4, 1/2, 3/8, 1/4, 3/16, 1/8 separately by sterilized distilled water. Then the each diluted sample was partly counted by Fluorescence microscope with SYBGreen as fluorescence stain (X axis). Another part were determined by Spectrophotometer under the Ex (Excitation wavelength) = 440 nm and Em (Emission wavelength) = 680 nm, the determined value, Fluorescence intensity (Y axis) could indirectly reflect the numbers of the cells.
Stability of predatory activity
The stability of predatory activity following heat treatment was tested and lysate after incubation at a higher temperature (>40°C) for 30 min did not exhibit predatory activity (Fig. 6A), indicating that Pseudobodo sp. KD51 was heat-sensitive. Lysate treated with pH between 5.5 and 8.0 (Fig. 6B) maintained a relatively high predatory activity but the activity decreased sharply at higher pH (9.5), suggesting that Pseudobodo sp. KD51 was relatively tolerant to pH. The rate increased along with the increasing salinity gradient (from 0 to 30‰) while the predatory rate fluctuated at 80% between 40 and 50‰ salinity (Fig. 6C).
(A). Temperature from 20–121°C. For temperature stability, lysate of C. vulgaris were inoculated and kept at different temperatures for 1 h and then the treated samples were added into the C. vulgaris cultures. (B). For pH stability, pH of lysate (initial pH = 7.85) were adjusted to other pH values (5.5–9.5). After being kept for 1 h, the pH of each was readjusted to pH = 7.85. (C). For salinity stability, the salinity of the lysate (initial salinity = 30‰) were adjusted to other salinity values and kept for 1 h, then readjusted to the initial salinity.
In early August 2011, an algal bloom, caused mainly by Heterosigma akashiwo and Skeletonema costatum broke out in the Xiamen sea, China. Water samples were collected between the generation and termination of the bloom and pretreated for the isolation of alga-inhibiting microorganisms. After several cycles of purification using plaque assay procedure, plaques with a diameter of 2 mm on the C.vulgaris cultures led us to believe that we had obtained a stable alga-pathogen system. There are few reports in the literature concerning the effects of inhibitory microorganisms on C. vulgaris, and most of them describe the relationship between the algae and bacteria , , with little related to viruses , , , , and no literature describing the relationship between a protist and C. vulgaris. Our study confirmed that the pathogen we isolated could cause the etiolation and aggregation of C. vulgaris at the bottom of the flask. To further understand the biological characteristics of this pathogen (Pseudobodo sp. KD51) and its relationship with the alga, the molecular features and the morphology (using SEM) were determined, as well as the predatory spectrum and potential. Furthermore, its stability by the treatment of different abiotic factors were tested. To our knowledge, this is the first report of this pathogen's predatory capability against C. vulgaris.
Until now, most studies have focused on inhibitory activities against toxic algal species, while studies focusing on the microorganisms against energy microalgae are few. Their findings indicated that the effects of bacteria, viruses and protists on alga might be species-specific , . In our study, among the 25 host alga for the predatory range test, three alga from Chlorophyta were susceptible to Pseudobodo sp. KD51 which implied that it had a relative broad predatory spectrum and might bring potential harm to the aquatic ecosystem through exerting influence on the important primary production. It is reported that predation in aquatic microbial food webs is dominated by phagotrophic protists, yet these microorganisms which exhibit a wide array of feeding strategies are still understudied compared to bacteria and phytoplankton. In addition, protistan grazing on bacteria is an important mechanism of nutrient regeneration, in particular, of nitrogen and phosphorus which arouse great attention about the relationship between protists and bacteria . Research about the effects of protist on alga are still rare and the reason for the relatively wide alga-predatory spectrum of Pseudobodo sp. KD51 are complexed and awaits for further study.
The results using different sized membrane filters showed that the size of the pathogen was 3–5 µm which excluded the possibility of the pathogen being a virus, since the biggest virus observed previously involved the approximately 1 µm, pandoravirus-like particles , . Also, it killed the alga through a direct way mechanism, since the lysate had no predatory activity after filtering through the 0.22 µm membrane. However, there are few reports concerning the direct inhibitory mechanism, and most of research is about the indirect inhibitory mechanism , , . As protistan trophic states run the gamut from strictly phagotrophic, to mixotrophic: partly autotrophic and partly phagotrophic, to primarily autotrophic but capable of phagotrophy , but which way for Pseudobodo sp. KD51 is not sure. Furthermore, protists often feed directly on bacterial primary producers from the autotrophic picoplankton, that is, on free-living unicellular cyanobacteria that are mainly affiliated to the genera Synechococcus and Prochlorococcus, and on small eukaryotic alga such as C. vulgaris in this study . The predatory mechanism and efficiency of protists are varied depending on the sizes of prey , , . Our molecular results showed that the pathogen was more related with P. tremulans with a size between 3–5 µm, the size of which is almost the same as its prey Chlorella vulgaris. Hence, whether predatory mechanism of the pathogen is strictly or partly phagotrophic and mixotrophic also needs further study to confirm. However, we had reasons to speculate that it was the pathogenic protist that attacked the alga based on the following reasons.
In fact, we had not thought of the protist to be the pathogen at first, as our lab has always investigated the relationship between algicidal bacteria and algae , . However, no gene fragment was amplified by the primer both from bacteria-specific (data not shown). Universal bacterial primers 27f/1492r  were used to exclude the possibility of the pathogen to be bacteria. After excluding the virus and bacteria, we suspected the pathogen may be a protist. SSU rDNA sequences based on a protozoa-specific primer could only be obtained from the DNA samples within the lysate while no band was available from the normal growing C.vulgaris without pathogen, suggesting that this primer pair had a high credibility. The primer amplifying the fragment revealed that the pathogen Pseudobodo sp. KD51 was most closely related to P. tremulans (99%). The flagellate P. tremulans was described by Griessmann (1914) from various marine enrichment cultures and refound by Ruinen (1938). Later, a form isolated from Aarhus Bay and from the Limfjord, where it is a numerous and constant part of the plankton, was in all probability identical to Griessmann's organism based on the original description . As reported by Sherr, predation in aquatic microbial food webs was dominated by phagotrophic protists . Several reports about the role of protist in red-tide had revealed the importance of protist as a powerful tool , . However, there were almost no reports directly describing the protists and energy alga. Green alga, have long been recognized as potentially good sources for biofuel production because of their high oil content and rapid biomass production. The average fatty acid contents of the algal oils are 36% oleic (18∶1), 15% palmitic (16∶0), 11% stearic (18∶0), 8.4% iso-17∶0, and 7.4% linoleic (18∶2) , , . As the energy problem becomes more and more urgent, measures should be taken to remove the adverse factors for the growth of energy alga or enhance the resistant ability of alga to other negative parts using genetic transformation method , .
Other evidence confirming the pathogen to be the bicosoecid Pseudobodo was the morphological features. The flagellate was described by Griessmann, and accurate morphological features were reported. As stated by Fenchel (1982), the flagellate is some 4 to 5 µm in diameter and the trophic cells are egg or pear-shaped, with two flagella. A posterior, smooth one passes through a ventral furrow and is used for temporary attachment to particles or to the water film. In addition, a systemic description based on light and electron microscopy was conducted , which reveals that the trophic cells of P. tremulans are pear or egg-shaped, with a broad posterior end; two flagellae of unequal length emerge from the base of a small apical papilla or “collar”; cells are 5–8 µm long; the anterior flagellar length is 12–15 µm and the posterior flagellar length is 8–10 µm. All these studies describe in detail the general ultrastructure of P. tremulans. Fenchel (1982) investigated a few ultrastructural characteristics of P. tremulans, which basically parallel those described in our study. Both strains have an identical, bifurcating rootlet emanating from the anterior basal body that forms the underlying support for the area of food ingestion , . In our study, based on the SEM photos (Fig. 4), the Pseudobodo sp. KD51 cells were about 4–5 µm long with an anterior collar around the anterior part of the cell in unstressed feeding cells. Some literatures had reported that the feeding habits of multicellular predators are complexed. First, the prey is drawn to the flagellate by a feeding current that is induced by the beat of one flagellum. It is then captured between the flagella and brought into contact with a sensitive area of the cell surface. A phagocytotic vesicle is formed at this morphologically inconspicuous spot and the prey is ingested. During the digestive process, the food vacuole is transported towards the posterior end of the protist and the undigested remains are subsequently expelled by exocytosis . Hence, in our study, the swimming flagella of Pseudobodo sp. KD51 may play important part in the process of alga-predation.
We were sure that the pathogen was the bicosoecid Pseudobodo sp. KD51 based on the morphological and molecular features. Since the bicosoecid Pseudobodo was discovered when we screened the predatory microorganisms but there was no literature directly describing the relationship between protists and alga, we investigated its predatory ability and predatory stability under different abiotic factors in order to understand its character. From the results of the impact and predatory activity of lysate containing Pseudobodo sp. KD51 on C.vulgaris cultures, we noted that at a low concentration, it took about 10 day for the protist to crack the host algal cells. Low nutrient levels and low protist concentrations may have been the reasons for the long period of infection. We speculated that Pseudobodo sp.KD51 had to directly kill the host and then draw nutrition from the released materials. Another reason may be that the host, C.vulgaris, has a growth cycle that is relatively short , . When the mother cell of host divide, about four daughter cells form which could partly offset the decrease of the total numbers. To confirm whether Pseudobodo sp. KD51 could directly affect the cell wall of the host, we must have to conduct some enzyme activity experiments, such as cellulase and pectinase. As there were reports about the inhibitory mechanisms through hydrolysing cell wall , .
The relationship between growth rate and temperature for temperate and tropical species of phytoplankton is well established. Eppley  demonstrate that the upper limit for phytoplankton growth rate is exponentially and positively correlated with temperature. Growth rates of herbivorous protists have been reported over the temperature range of 5–30°C. In our study, lysate after incubation at a higher temperature (>40°C) for 30 min did not exhibit predatory activity, indicating that Pseudobodo sp. KD51 was heat-sensitive (Fig. 6A). Since it was reported that the optimum growth temperature for P. tremulans (ATCC PRA184) on ATCC medium 1525 was 4.0°C, we deduced that the Pseudobodo sp. KD51 in our study was a temperate species. There were few reports concerning the effect of pH on the predatory activity of Pseudobodo. In fact, Pedersen  divided six marine heterotrophic protists into two groups: pH-tolerant species and pH-non-tolerant species. The tolerant group consisted of Balanion. comatum, which experienced a reduction in growth when pH exceeded 9.5, and Oxyrrhis. marina, which maintained its maximum growth within the pH limit of the experiment (pH 9.9). The pH-non-tolerant group consisted of three ciliates and one dinoflagellate. In our study Pseudobodo sp. KD51 was pH tolerant since it retained its predatory activity after treatment under different pH, except those exceeding 9.5, when a sharp decrease of the activity was discovered (Fig. 6B). With regard to the salinity effects on protists, Moreno described multiple effects of salinity on the photosynthesis of the protist Euglena gracilis . However unlike Euglena gracilis, Pseudobodo sp. KD51 had no chloroplasts, hence, how salinity affected its growth and predatory activity was unknown and awaits further research. Our study, indicated that Pseudobodo sp. KD51 could be salinity tolerant since the predation activity, even under high salinity (60%), did not sharply decrease (Fig. 6C).
Bicosoecids consume bacteria in the oceanic environment and might have a direct effect on deep-sea marine fluxes of nutrients. While more research continues on these organisms, much remains unknown about the bicosoecids and other deep-water nanoflagellates and their relationship with other members of phytoplankton. Bicosoecids are bacteriovores, and apparently play a key role in marine flux regulation. Because studies of deep-sea nanoflagellates are relatively recent, more information is currently being gathered in terms of the effect of bicosoecids on the marine environment. In fact, research concerning the relationship between algae and protists still does not go very far, and further work is needed, for example, what is the predatory process, how abiotic factors affect the protist activity, and what about the possible practical application of protists.
C. vulgaris was co-cultured with pathogen both in liquid and in agar plate condition. A. Growth of C. vulgaris incubated with pathogen on 0, 5 and 10 days post-infection. B. Plaque formation on the C. vulgaris lawn plate (90 mm petri dish). Plaques 2 to 3 mm in diameter were seen.
Professor John Hodgkiss of The University of Hong Kong is thanked for his assistance with English and the comments on the manuscript.
Conceived and designed the experiments: ZRC TLZ. Performed the experiments: ZRC XQL JYZ. Analyzed the data: ZRC BZZ LXY HJZ YL TLZ. Contributed reagents/materials/analysis tools: YT JWL. Wrote the paper: ZRC TLZ. Chose the sampling site: ZRC LXY WZ.
- 1. Tokuşoglu Ö, üUnal M (2003) Biomass nutrient profiles of three microalgae: Spirulina platensis, Chlorella vulgaris, and Isochrisis galbana. Journal of food science 68(4): 1144–1148.
- 2. Wang W, Zhou W, Liu J, Li Y, Zhang Y (2013) Biodiesel production from hydrolysate of Cyperus esculentus waste by Chlorella vulgaris. Bioresource Technology 136: 24–29.
- 3. Wang H, Anderson MA, Chen F, Willliams E, Place AR, et al. (2012) Novel bacterial isolate from Permian groundwater, capable of aggregating potential biofuel-producing microalga Nanochloropsis oceanica IMET1. Applied and Environmental Microbiology 78(5): 1445–1453.
- 4. Scott SA, Davey MP, Dennis JS, Horst I, Howe CJ, et al. (2010) Biodiesel from algae: challenges and prospects. Current Opinion in Biotechnology 21(3): 277–286.
- 5. Lewis M (1990) Chronic toxicities of surfactants and detergent builders to algae: a review and risk assessment. Ecotoxicology and Environmental Safety 20(2): 123–140.
- 6. MU R-m, FAN Z-q, PEI H-y, YUAN X-l, Liu S-x, et al. (2007) Isolation and algae-lysing characteristics of the algicidal bacterium B5. Journal of Environmental Sciences 19(11): 1336–1340.
- 7. Kodani S, Imoto A, Mitsutani A, Murakami M (2002) Isolation and identification of the antialgal compound, harmane (1-methyl-β-carboline), produced by the algicidal bacterium, Pseudomonas sp. K44-1. Journal of Applied Phycology 14(2): 109–114.
- 8. Kim YS, Lee D-S, Jeong S-Y, Lee WJ, Lee M-S (2009) Isolation and characterization of a marine algicidal bacterium against the harmful raphidophyceae Chattonella marina. The Journal of Microbiology 47(1): 9–18.
- 9. Xu Y, Ge F, Wang N, Zhu R, Tao N (2010) Selective Algicidal Activity of Surfactant and Its Mechanism 1. Journal of Hazardous, Toxic, and Radioactive Waste 15: 21–25.
- 10. Liang J-w, Lin W-t (2009) Isolation and Identification of Algae-lysing Actinomycetes and Its Lytic Characteristics [J]. Environmental Science & Technology 32(9): 019.
- 11. Zhang H, An X, Zhou Y, Zhang B, Zhang S, et al. (2013) Effect of oxidative stress induced by Brevibacterium sp. BS01 on a HAB causing species-Alexandrium tamarense. PLOS ONE 8: e63018.
- 12. Zheng X, Zhang B, Zhang J, Huang L, Lin J, et al. (2012) A marine algicidal actinomycete and its active substance against the harmful algal bloom species Phaeocystis globosa. Applied microbiology and biotechnology 97: 9207–9215.
- 13. Castberg T, Thyrhaug R, Larsen A, Sandaa RA, Heldal M, et al. (2002) Isolation and characterization of a virus that infects Emiliania huxleyi (haptophyta) 1. Journal of Phycology 38: 767–774.
- 14. Cai W, Wang H, Tian Y, Chen F, Zheng T (2011) Influence of a Bacteriophage on the Population Dynamics of Toxic Dinoflagellates by Lysis of Algicidal Bacteria. Applied and Environmental Microbiology 77(21): 7837–7840.
- 15. Tillmann U (2005) Interactions between Planktonic Microalgae and Protozoan Grazers1. Journal of Eukaryotic Microbiology 51(2): 156–168.
- 16. Lee Y-J, Choi J-K, Kim E-K, Youn S-H, Yang E-J (2008) Field experiments on mitigation of harmful algal blooms using a Sophorolipid—Yellow clay mixture and effects on marine plankton. Harmful Algae 7(2): 154–162.
- 17. Turner J (2006) Harmful algae interactions with marine planktonic grazers. Ecology of harmful algae: Springer 189: 259–270.
- 18. JEONG HJ, YOO YD, KIM JS, KIM TH, KIM JH, et al. (2004) Mixotrophy in the phototrophic harmful alga Cochlodinium polykrikoides (Dinophycean): prey species, the effects of prey concentration, and grazing impact. Journal of Eukaryotic Microbiology 51(5): 563–569.
- 19. Tillmann U (2004) Interactions between Planktonic Microalgae and Protozoan Grazers1. Journal of Eukaryotic Microbiology 51(2): 156–168.
- 20. Rose JM, Caron DA (2007) Does low temperature constrain the growth rates of heterotrophic protists? Evidence and implications for algal blooms in cold waters. Limnology and Oceanography 52(2): 886–895.
- 21. O'Kelly CJ, Nerad TA (1998) Kinetid architecture and bicosoecid affinities of the marine heterotrophic nanoflagellate Caecitellus parvulus(Griessmann, 1913) Patterson et al., 1993. European Journal of Protistology 34(4): 369–375.
- 22. Karpov SA (2000) Ultrastructure of the aloricate bicosoecid Pseudobodo tremulans, with revision of the order Bicosoecida. Protistology 1(3): 100–108.
- 23. Arndt H, Hausmann K, Wolf M (2003) Deep-sea heterotrophic nanoflagellates of the Eastern Mediterranean Sea: qualitative and quantitative aspects of their pelagic and benthic occurrence. Marine Ecology Progress Series 256: 45–56.
- 24. O'Kelly CJ, Patterson DJ (1996) The flagellar apparatus of Cafeteria roenbergensis Fenchel & Patterson, 1988 (Bicosoecales = Bicosoecida). European Journal of Protistology 32(2): 216–226.
- 25. Fenchel T (1982) Ecology of Heterotrophic Microflagellates. I. Some Important Forms and Their Functional Morphology. Marine ecology progress series Oldendorf 8: 211–223.
- 26. Adl SM, Simpson AG, Farmer MA, Andersen RA, Anderson OR, et al. (2005) The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. Journal of Eukaryotic Microbiology 52(5): 399–451.
- 27. Guillard RR (1975) Culture of phytoplankton for feeding marine invertebrates. Culture of marine invertebrate animals Plenum 29–60.
- 28. Tomaru Y, Shirai Y, Suzuki H, Nagumo T, Nagasaki T (2008) Isolation and characterization of a new single-stranded DNA virus infecting the cosmopolitan marine diatom Chaetoceros debilis. Aquatic Microbial Ecology 50: 103–112.
- 29. Suttle CA, Chan AM, Cottrell MT (1991) Use of ultrafiltration to isolate viruses from seawater which are pathogens of marine phytoplankton. Applied and environmental microbiology 57(3): 721–726.
- 30. Kim J-D, Kim J-Y, Park J-K, Lee C-G (2009) Selective control of the Prorocentrum minimum harmful algal blooms by a novel algal-lytic bacterium Pseudoalteromonas haloplanktis AFMB-008041. Marine Biotechnology 11: 463–472.
- 31. Asif MH, Dhawan P, Nath P (2000) A simple procedure for the isolation of high quality RNA from ripening banana fruit. Plant Molecular Biology Reporter 18: 109–115.
- 32. Medlin L, Elwood HJ, Stickel S, Sogin ML (1988) The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 71(2): 491–499.
- 33. Tan HY, Sieo CC, Abdullah N, Liang JB, Huang XD, et al. (2013) Effect of Condensed Tannins on Bovine Rumen Protist Diversity Based on 18S rRNA Gene Sequences. Journal of Eukaryotic Microbiology 60: 98–100.
- 34. Kim O-S, Cho Y-J, Lee K, Yoon S-H, Kim M, et al. (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. International journal of systematic and evolutionary microbiology 62(3): 716–721.
- 35. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular biology and evolution 28(10): 2731–2739.
- 36. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular biology and evolution 4(4): 406–425.
- 37. Jeong S-Y, Ishida K, Ito Y, Okada S, Murakami M (2003) Bacillamide, a novel algicide from the marine bacterium, Bacillus sp. SY-1, against the harmful dinoflagellate, Cochlodinium polykrikoides. Tetrahedron letters 44(43): 8005–8007.
- 38. Bubeck JA, Pfitzner AJ (2005) Isolation and characterization of a new type of chlorovirus that infects an endosymbiotic Chlorella strain of the heliozoon Acanthocystis turfacea. Journal of General Virology 86(10): 2871–2877.
- 39. Kang M, DUNIGAN DD, Van Etten JL (2005) Chlorovirus: a genus of Phycodnaviridae that infects certain chlorella-like green algae. Molecular plant pathology 6(3): 213–224.
- 40. Pfitzner AJP, Bubeck JA (2005) Isolation and characterization of a new type of chlorovirus that infects an endosymblotic Chlorella strain of the heliozoon Acanthocystis turfacea. Journal of General Virology 86: 2871–2877.
- 41. Hoshina R, Shimizu M, Makino Y, Haruyama Y, Ueda S-i, et al. (2010) Isolation and characterization of a virus (CvV-BW1) that infects symbiotic algae of Paramecium bursaria in Lake Biwa, Japan. Virology Journal 7: 222.
- 42. Shirai Y, Tomaru Y, Takao Y, Suzuki H, Nagumo T, et al. (2008) Isolation and characterization of a single-stranded RNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus Meunier. Applied and environmental microbiology 74(13): 4022–4027.
- 43. Pernthaler J (2005) Predation on prokaryotes in the water column and its ecological implications. Nature Reviews Microbiology 3: 537–546.
- 44. Kåhrström CT (2013) Viral biology: Pandora's box goes viral. Nature Reviews Microbiology
- 45. Philippe N, Legendre M, Doutre G, Couté Y, Poirot O, et al. (2013) Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes. Science 341: 281–286.
- 46. Su JQ, Yang XR, Zheng TL, Tian Y, Jiao NZ, et al. (2007) Isolation and characterization of a marine algicidal bacterium against the toxic dinoflagellate Alexandrium tamarense. Harmful Algae 6: 799–810.
- 47. Roth PB, Twiner MJ, Mikulski CM, Barnhorst AB, Doucette GJ (2008) Comparative analysis of two algicidal bacteria active against the red tide dinoflagellate Karenia brevis. Harmful Algae 7: 682–691.
- 48. Kim M-J, Jeong S-Y, Lee S-J (2008) Isolation, identification, and algicidal activity of marine bacteria against Cochlodinium polykrikoides. Journal of Applied Phycology 20: 1069–1078.
- 49. Sherr EB, Sherr BF (2002) Significance of predation by protists in aquatic microbial food webs. Antonie van Leeuwenhoek 81: 293–308.
- 50. Caron DA, Lim EL, Miceli G, Waterbury JB, Valois F (1991) Grazing and utilization of chroococcoid cyanobacteria and heterotrophic bacteria by protozoa in laboratory cultures and a coastal plankton community. Marine ecology progress series Oldendorf 76: 205–217.
- 51. Corno G, Jürgens K (2006) Direct and indirect effects of protist predation on population size structure of a bacterial strain with high phenotypic plasticity. Applied and environmental microbiology 72: 78–86.
- 52. Roberts EC, Wootton EC, Davidson K, Jeong HJ, Lowe CD, et al. (2011) Feeding in the dinoflagellate Oxyrrhis marina: linking behaviour with mechanisms. Journal of Plankton Research 33: 603–614.
- 53. Shannon SP, Chrzanowski TH, Grover JP (2007) Prey food quality affects flagellate ingestion rates. Microbial ecology 53: 66–73.
- 54. Wang B, Yang XR, Lu J, Zhou Y, Su J, et al. (2011) A marine bacterium producing protein with algicidal activity against Alexandrium tamarense. Harmful Algae
- 55. Su J, Yang X, Zhou Y, Zheng T (2011) Marine bacteria antagonistic to the harmful algal bloom species Alexandrium tamarense (Dinophyceae). Biological Control 56: 132–138.
- 56. Yu J, Zhou X-F, Yang S-J, Liu W-H, Hu X-F (2013) Design and application of specific 16S rDNA-targeted primers for assessing endophytic diversity in Dendrobium officinale using nested PCR-DGGE. Applied microbiology and biotechnology 97: 9825–9836.
- 57. JEONG HJ, SHIM JH, LEE CW, KIM JS, KOH SM (1999) Growth and Grazing Rates of the Marine Planktonic Ciliate Strombidinopsis sp. on Red-Tide and Toxic Dinoflagellates. Journal of Eukaryotic Microbiology 46: 69–76.
- 58. Jeong HJ, Park JY, Nho JH, Park MO, Ha JH, et al. (2005) Feeding by red-tide dinoflagellates on the cyanobacterium Synechococcus. Aquatic Microbial Ecology 41: 131–143.
- 59. Demirbas A, Demirbas MF (2010) Algae energy: algae as a new source of biodiesel: Springer.
- 60. Hossain AS, Salleh A, Boyce AN, Naqiuddin M (2008) Biodiesel fuel production from algae as renewable energy. American Journal of Biochemistry and Biotechnology 4: 250.
- 61. Happe T, Hemschemeier A, Winkler M, Kaminski A (2002) Hydrogenases in green algae: do they save the algae's life and solve our energy problems? Trends in Plant Science 7: 246–250.
- 62. Radakovits R, Jinkerson RE, Darzins A, Posewitz MC (2010) Genetic engineering of algae for enhanced biofuel production. Eukaryotic Cell 9: 486–501.
- 63. Radakovits R, Jinkerson RE, Fuerstenberg SI, Tae H, Settlage RE, et al. (2012) Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana. Nature communications 3: 686.
- 64. Kodama Y, Fujishima M (2012) Cell division and density of symbiotic Chlorella variabilis of the ciliate Paramecium bursaria is controlled by the host's nutritional conditions during early infection process. Environmental Microbiology 14: 2800–2811.
- 65. Collet P, Hélias A, Lardon L, Ras M, Goy R-A, et al. (2011) Life-cycle assessment of microalgae culture coupled to biogas production. Bioresource Technology 102: 207–214.
- 66. Lee S-o, Kato J, Takiguchi N, Kuroda A, Ikeda T, et al. (2000) Involvement of an Extracellular Protease in Algicidal Activity of the Marine Bacterium Pseudoalteromonas sp. Strain A28. Applied and environmental microbiology 66: 4334–4339.
- 67. Pedersen MF, Hansen PJ (2003) Effects of high pH on the growth and survival of six marine heterotrophic protists. Marine Ecology Progress Series 260: 33–41.
- 68. González-Moreno S, Gómez-Barrera J, Perales H, Moreno-Sánchez R (1997) Multiple effects of salinity on photosynthesis of the protist Euglena gracilis. Physiologia Plantarum 101: 777–786.