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mNanog Possesses Dorsal Mesoderm-Inducing Ability by Modulating Both BMP and Activin/Nodal Signaling in Xenopus Ectodermal Cells

  • Aya Miyazaki ,

    Contributed equally to this work with: Aya Miyazaki, Kentaro Ishii

    Affiliation Department of Life Sciences (Biology), Graduate School of Arts and Sciences, the University of Tokyo, Tokyo, Japan

  • Kentaro Ishii ,

    Contributed equally to this work with: Aya Miyazaki, Kentaro Ishii

    Affiliation Department of Life Sciences (Biology), Graduate School of Arts and Sciences, the University of Tokyo, Tokyo, Japan

  • Satoshi Yamashita,

    Affiliation Department of Life Sciences (Biology), Graduate School of Arts and Sciences, the University of Tokyo, Tokyo, Japan

  • Susumu Nejigane,

    Affiliation Department of Life Sciences (Biology), Graduate School of Arts and Sciences, the University of Tokyo, Tokyo, Japan

  • Shinya Matsukawa,

    Affiliation Department of Life Sciences (Biology), Graduate School of Arts and Sciences, the University of Tokyo, Tokyo, Japan

  • Yuzuru Ito,

    Affiliation Research Center for Stem Cell Engineering, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba City, Ibaraki, Japan

  • Yasuko Onuma,

    Affiliation Research Center for Stem Cell Engineering, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba City, Ibaraki, Japan

  • Makoto Asashima,

    Affiliations Department of Life Sciences (Biology), Graduate School of Arts and Sciences, the University of Tokyo, Tokyo, Japan, Research Center for Stem Cell Engineering, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba City, Ibaraki, Japan

  • Tatsuo Michiue

    Affiliation Department of Life Sciences (Biology), Graduate School of Arts and Sciences, the University of Tokyo, Tokyo, Japan

mNanog Possesses Dorsal Mesoderm-Inducing Ability by Modulating Both BMP and Activin/Nodal Signaling in Xenopus Ectodermal Cells

  • Aya Miyazaki, 
  • Kentaro Ishii, 
  • Satoshi Yamashita, 
  • Susumu Nejigane, 
  • Shinya Matsukawa, 
  • Yuzuru Ito, 
  • Yasuko Onuma, 
  • Makoto Asashima, 
  • Tatsuo Michiue



In Xenopus early embryogenesis, various genes are involved with mesoderm formation. In particular, dorsal mesoderm contains the organizer region and induces neural tissues through the inhibition of bone morphogenetic protein (BMP) signaling. In our initial study to identify novel genes necessary for maintaining the undifferentiated state, we unexpectedly revealed mesoderm-inducing activity for mNanog in Xenopus.

Methodology/Principal Findings

The present series of experiments investigated the effect of mNanog gene expression on Xenopus embryo. Ectopic expression of mNanog induced dorsal mesoderm gene activity, secondary axis formation, and weakly upregulated Activin/nodal signaling. The injection of mNanog also effectively inhibited the target genes of BMP signaling, while Xvent2 injection downregulated the dorsal mesoderm gene expression induced by mNanog injection.


These results suggested that mNanog expression induces dorsal mesoderm by regulating both Activin/nodal signaling and BMP signaling in Xenopus. This finding highlights the possibly novel function for mNanog in stimulating the endogenous gene network in Xenopus mesoderm formation.


Germ layer formation is one of the most important processes in the fundamental patterning of an embryo. In Xenopus early embryogenesis, mesoderm is induced by signals secreted from endodermal tissue during the blastula stage, and nodal-related (Xnr) genes are known to play important roles in this biological process. VegT and Wnt signaling induces ¥¥nr5/6, followed by the sequential upregulation of Xnr1/2 and Xnr4 [1][3], and consequently, various mesoderm gene activities. Activin A, a TGF-ß superfamily member, was first identified as a factor that could induce both ventral and dorsal mesoderm [4]. In dorsal mesoderm, also called the Spemann-Mangold organizer, several genes including chordin (chd), noggin (nog), goosecoid (gsc), and xlim-1 are expressed to induce neural tissues in the presumptive neuroectoderm [5][8].

Xenopus blastula ectodermal cells, or animal cap (AC) cells, possess multipotency and can differentiate into many types of tissues including mesoderm. However, the period for mesoderm induction in AC is limited until early gastrula. This phenomenon is known as “loss of mesodermal competence" (LMC) [9]. To identify novel factors involved with maintaining multipotency in Xenopus embryo, we first attempted to find genes involved in releasing LMC.

The first candidate gene we examined was mNanog, which encodes a homeodomain protein and is efficiently expressed in mammalian embryonic stem (ES)/induced pluripotent stem (iPS) cells [10][12]. Our preliminary experiments revealed that in the presence of Activin A treatment, mNanog injection promotes AC elongation and some mesodermal gene expression even at the late gastrula stage (data not shown). We also unexpectedly found that mNanog injection induces AC elongation without Activin A treatment and could promote the expression of dorsal mesoderm genes such as chd, gsc, and xlim-1 in AC. Further experiments revealed showed that mNanog also weakly promotes Activin/nodal signaling and inhibits BMP signaling. Together, these data indicated that mNanog modulates both these signaling pathways to induce the dorsal mesoderm cell fate in Xenopus AC, suggesting a novel function for mNanog in embryogenesis.

Materials and Methods


The mNanog gene was amplified by RT-PCR with mouse cDNA (from mouse ES D3 cell line (American Type Culture Collection(ATCC)). All experiments with the mouse ES cells were approved by the institutional ethics committee (Graduate Schools of Arts and Sciences, University of Tokyo: #19-19 and #23-10). mNanog/SK was made by inserting the amplified fragment of mNanog into the EcoRV site of pBluescriptII SK-. For injection, we inserted the EcoRI-XhoI fragment of mNanog/SK into the EcoRI-XhoI site of pCS2 to construct mNanog/CS2. dnALK4/CS2, Xnr2/CS2, Xnr5/CS2, cmXnr1/CS2, cmXnr2/CS2, and Xvent2/CS2 were also used for microinjection [3], [13][16]. For lineage tracing, we used pCS2-lacZ.


Microinjecion was performed using a picojector (Harvard Medical Instruments). RNA for injection was synthesized with the mMESSAGE mMACHINE SP6 kit (Ambion/Applied Biosystems). Injected embryo was obtained by artificial fertilization and dejellied with 4.6% L-cysteine hydrochloride solution. Injection was performed in 5% Ficoll/1 X Steinberg's Solution (SS). Injected embryos were cultured in 0.1 X SS solution. Xenopus maintenance was carried out in compliance with institutional regulations and all Xenopus experiments were approved by the institutional ethics committee noted above (#21-10 and #24-8).

Animal cap assay

mRNA was injected into the animal pole region of 2-cell-stage embryos. ACs were dissected at the late blastula stage (Stage 9), and then cultured to the appropriate stage with/without treatment with 10 ng/ml of Activin A. The shape of treated ACs was observed at about 12 hours after treatment. Treated AC was also assessed by the expressions of several marker genes.


We synthesized cDNA with 0.3 µg of total RNA prepared from 5–10 ACs. For reverse transcription, we used Superscript III (Invitrogen), and PCR was carried out with Ex Taq DNA polymerase (Takara, Japan). Primer sets used for PCR were as follows:























In situ hybridization

Embryos were bleached in hydrogen peroxide-methanol before fixation in MEMFA (formaldehyde-MOPS solution) and dehydration with ethanol. Rehydrated embryos were hybridized with DIG-labeled probe for 24 h at 60°C. Embryos were then incubated with 2000× anti-DIG antibody (Roche) for 12 h, washed 5 times, and then visualized by reaction in NBT/BCIP solution (Roche).

TUNEL staining

In situ TUNEL assay for detecting apoptotic cells were carried out by previous method [17]. Briefly, fixed and bleached embryos were incubated with TdT enzyme (Invitrogen) and DIG-dUTP (Roche) for 1day. After washing, embryos were incubated with anti-DIG antibody, washed with MAB and detected with BM-purple (Roche).

Cycloheximide (CHX) treatment

The procedure for CHX treatment was basically carried out as previously described [18]. Normal or Injected embryos were treated with 40 ng/ml of CHX in 1× Steinberg's solution at Stage 7, and was homogenized at Stage 9.

Xenopus Nanog gene cloning

To clone the Xenopus homolog of Nanog gene, we carried out degenerated PCR with following primers:







The positions of these primers are summarized in Fig. S1.


mNanog injection stimulated mesoderm-inducing activity in AC

At first, we confirmed the expression of mNanog protein in Xenopus embryo. By Western blot analysis, we could detect a protein of 40 kDa, consistent with the molecular size of the mNanog protein (Fig. 1A). Immunohistochemistry with anti-mNanog antibody showed intense mNanog reactivity in the nuclei of mNanog-injected embryos (Fig. 1B, C). Next, we examined the effects of mNanog on Xenopus early embryogenesis. 200 pg of mNanog mRNA injected into the animal pole of 4-cell embryos caused a defect in the anterior region at the late neural stage (Fig. 1D, E), although no obvious developmental delay was observed (data not shown). In 3-day-old tadpoles, head defects with small eye vesicles could be seen (Fig. 1G, Table S1). This head defect was more intense and lethality was also strikingly increased by injection with 400 pg of mNanog (Table S1), although the lethality did not manifest until the neural stage (data not shown). To examine whether the head defect occurred by apoptosis, we carried out terminal deoxynucleotidyl transferase-mediated deoxyuridine-triphosphate nick end-labeling (TUNEL) assays. mNanog injection increased the number of apoptosis-positive cells, suggesting that the head defect was due to apoptosis in the head region (Fig. 1H–J). We then observed the AC shapes. Injection of 200 pg of mNanog slightly elongated the AC in the absence of Activin A treatment (Fig. 1K, L), but less so with Activin A treatment (Fig. 1M). This elongation was dependent on the dose of injected mNanog (Fig. 1O). On the other hand, elongation of AC by Activin A was suppressed by injection with mNanog (Fig. 1N, O). Indeed, RT-PCR analysis of stage-18 AC revealed that mNanog injection decreased expression of mesoderm genes such as ms-actin [19] and Xbra [20] in Activin A-treated AC, whereas the expressions of notochord markers, chd and Xnot, were upregulated (Fig. 1P). Furthermore, injection of 200 pg of mNanog mRNA into the ventral hemispheres of 4-cell embryos induced a weak secondary axis formation (Fig. 1Q, R). This induced axis did not include a head structure with eye vesicles (Fig. 1S), suggesting that mNanog may function not as a positive regulator of canonical Wnt signaling like siamois (sia) [21], but instead as a BMP inhibitor like chd and truncated-type BMP receptor (tBR) [5],[22]. Furthermore, HE staining of mNanog-injected tadpole revealed both neural structures and notochord (Fig. 1T, U). Together, these results raised the possibility that mNanog possesses dorsal mesoderm-inducing activity in Xenopus embryo.

Figure 1. Mesodermal tissues were induced by mNanog mRNA injection.

A) Detection of exogenous mNanog protein in Xenopus embryo by Western blotting with antibodies to mNanog (upper) and alpha-tubulin (lower). Non-injected embryo control (lane 1). mNanog-injected embryo (lane 2). B–C) Subcellular localization of mNanog protein in stage-10 embryo injected with mNanog mRNA. Ectoderm from normal embryo (B) or mNanog-injected embryo (C). Dissected tissues were fixed at stage 9, and then treated with anti-mNanog antibody. The green signal indicates mNanog protein. DAPI staining was also done (blue). Scale bar; 0.02 mm. D-G) Superficial phenotype of mNanog-injected embryos. Stage-18 (D, E) and stage-38 embryos (F, G) were observed. (D, F) Uninjected embryo. (E, G) 200 pg of mNanog mRNA was microinjected into the animal pole region at the 4-cell stage. Scale bar; 0.5 mm (D) and 1 mm (F). H, I) TUNEL staining of normal (H) or mNanog-injected (200 pg: I) embryos was performed at stage 20. Apoptotic cells appear as blue dots. J) The number of apoptosis-positive cells in normal embryo (n = 14) and 200 pg of mNanog injected embryo (n = 18) was described in bar graph. Error bar indicates S.E. K–N) Comparison of AC shapes between mNanog-injected embryos with and without Activin A treatment. All ACs were dissected at stage 9 and observed at stage 18. Normal ACs (K). ACs injected with mNanog into the animal pole region (L). ACs treated with 10 ng/ml Activin A at stage 9 (M). mNanog-injected ACs treated with Activin A at stage 9 (N). Scale bar; 0.5 mm. O) Analysis of AC elongation in (K)–(N). Both the shortest and longest lengths of AC were measured, and averages of the length ratio (long/short) were expressed as bar graphs. Normal AC (n = 50), 10 ng/ml Activin A-treated AC (n = 58), AC with 200 pg of mNanog injected (n = 46), AC with 200 pg of mNanog injected and 10 ng/ml Activin A treatment (n = 47), 400 pg of mNanog injected AC (n = 52), 400 pg of mNanog injected and 10 ng/ml Activin A treatment (n = 42). Error bar indicates S.E. P) RT-PCR analysis with RNA derived from stage-18 AC. Normal AC (lane 2), AC with 10 ng/ml of Activin A treatment (lane 3), AC injected with 200 pg of mNanog (lane 4), or AC injected with 200 pg of mNanog and treated with Activin A (lane 5) were used. WE: whole embryo. Q–S) Secondary axis formation with mNanog injection. 400 pg of mNanog mRNA was injected into the ventral marginal zone (VMZ) at the 4-cell stage. Phenotypes were observed at stage 40. Secondary axis without head structure was observed in mNanog-injected embryo (15/30, two independent experiments). Arrow indicates a secondary axis. Scale bar; 1 mm. T, U) HE-stained histological sections of stage-40 embryo. Uninjected embryo (T). An embryo injected with 200 pg of mNanog mRNA into the VMZ (U). Arrowhead indicates notochord-like structure. Scale bar: 0.2 mm.

mNanog injection promoted expression of dorsal mesodermal genes, but inhibited ventral mesodermal genes in both AC and embryos

The phenotypes of mNanog-injected embryos and their corresponding ACs suggested to us that mNanog could induce dorsal mesodermal tissues. We next performed RT-PCR analysis to examine the expression of mesodermal genes in earlier stages. When 200 pg of mNanog mRNA was injected into 2-cell embryos, the expression of dorsal mesodermal marker genes chd, gsc, and xlim-1 was increased in stage-11 ACs without Activin A treatment (Fig. 2A 1st–3rd column; lane 3, 5), and 400 pg of mNanog mRNA injection further increased these gene expressions (Fig. 2A column 1, 2, 3; lane 7). The mNanog injections only slightly enhanced the same expressions in Activin A-treated AC (Fig. 2A 1st–3rd column; lane 4, 6, 8). On the other hand, Xbra expression was not effectively induced by mNanog injection (Fig. 2A 4th column, lane 3, 5, 7), and induction of Xbra expression by Activin A treatment was clearly inhibited by mNanog (Fig. 2A 4th column, lane 4, 6, 8). Similar inhibition was observed with Xwnt8, mix, mixer, Cerberus (Cer), and Sox17α [23][27] (Fig. 2A 5th–8th columns). To assess whether the enhancement of dorsal mesodermal gene expressions was specific for mNanog function, we carried out RT-PCR with a deletion mutant of mNanog that produces a protein lacking the C-terminus domain including the W-repeat motif (mNanogΔCD; Fig. 2B) [28], [29]. Dorsal marker gene expression was not induced by mNanogΔCD (Fig. 2B, 1st–3rd columns). Quantitative analysis of the mNanog mRNA also suggested that mNanog function in mesoderm induction requires dimerization of the mNanog protein (Fig. 2B).

Figure 2. mNanog possesses dorsal mesoderm-inducing activity.

A) RT-PCR analysis of various marker gene expressions. Expressions of chd, gsc, and xlim-1 (dorsal mesoderm markers), Xbra (pan-mesoderm marker), Xwnt8, mix, mixer (ventral mesoderm markers), Cer, and Sox17alpha (endoderm marker) were observed. Ornithine decarboxylase (ODC) was also observed as a quantitative control. 200 pg (lane 5, 6) or 400 pg (lane 7, 8) of mNanog was injected into the AC region of 2-cell embryos. ACs were dissected at stage 9, treated with 10 ng/ml of Activin A (lane 4, 6, 8), and cultured until stage 11. Whole embryo (WE; stage 11) was also examined. B) Full-length (FL) or a deletion mutant of mNanog (deltaCD) was injected and marker gene expressions were observed. Upper column shows a diagram of the mNanog construct. Filled and gray boxes indicate the homeodomain (HD) and W-repeat (WR) regions, respectively. Arrow shows the position of primers for RT-PCR. Lower column shows the result. Non-injected AC (lane 1); full-length (FL) mNanog injected (lane 2); mNanogΔCD injected (lane 3). The level of mNanog was also observed to check the precision of injection (4th column). C–F) The effects of mNanog injection on endogenous chd/Xbra expressions. Scale bar; 500 µm. Expressions of chd in stage-12 embryos injected with 800 pg of lacZ (C) alone or 200 pg of mNanog and 400 pg of lacZ (D) into the ventral marginal zone at the 4-cell stage. These patterns are representative of 17/17 (C) and 12/15 (D) embryos. Black arrow indicates endogenous chd expression. Expression of Xbra in stage-11 embryos injected with nothing (E) or 200 pg of mNanog and 400 pg of lacZ (F) into the ventral marginal zone at the 4-cell stage. These patterns are representative of 9/9 (E) and 8/11 (F) embryos. White arrow indicates the mNanog-injected region. Injected area was active-stained by Red-Gal (Except for (E)). D: Dorsal. V: Ventral. G) Comparison of mesodermal gene expressions between AC cells injected with several doses of mNanog (lane 3–5) and those treated with Activin A (lane 6, 7). We observed the expression of gsc (1st column), chd (2nd column), Xbra (3rd column), and ODC (4th column). H) mNanog did not induce target genes of early canonical Wnt signaling. 100 pg (lane 2), 200 pg (lane 3), or 300 pg (lane 4) of mNanog was injected into animal poles and dissected at stage 8. Similarly, 500 pg of ß-catenin was injected and dissected (lane 5). Transcription of siamois (1st column) and Xnr3 (2nd column) was observed.

To examine the effect of mNanog on endogenous mesodermal gene expressions, we performed in situ hybridization. Endogenous chd expression was observed in the dorsal lip region (Fig. 2C, black arrow), and only the control lacZ injection did not affect chd expression (Fig. 2C, white arrow). When mNanog was injected into the ventral marginal zone, ectopic chd expression was obviously induced (Fig. 2D, white arrow), suggesting that mNanog can induce chd expression in embryo, confirming the RT-PCR analysis. Xbra expression was seen around the yolk plug in normal embryo (Fig. 2E), but was specifically inhibited in the mNanog-injected area (Fig. 2F, white arrow), suggesting that mNanog negatively regulates Xbra expression. These data also indicated that mNanog affects the endogenous expression of mesodermal genes in Xenopus embryo.

To further profile the mechanism of mesoderm induction driven by mNanog, we next compared the expression of mesodermal marker genes between Activin A treatment and mNanog injection. AC from normal embryo did not express any mesodermal genes (Fig. 2G, lane 2), but following treatment with Activin A at the dose of 1–10 ng/ml, chd and gsc were expressed in a dose-dependent manner (Fig. 2G, lane 6–7). Xbra was also efficiently expressed following both 1 ng/ml and 10 ng/ml Activin A treatment (Fig. 2G, lane 6–7). When mNanog was injected, gsc and chd expressions gradually increased (Fig. 2G, lane 3–5), as did Xbra expression, although the effect of mNanog injection on Xbra expression was less enhanced than that induced by Activin A treatment (Fig. 2G, 3rd column).

Several mesodermal genes including chd are induced by overexpression of canonical Wnt signaling and Xnr genes [5], [30]. We therefore examined the expression of early canonical Wnt signaling target genes in our system. There was no increased expression of sia and Xnr3, known targets of canonical Wnt signaling, despite the injection of mNanog mRNA [21], [31] (Fig. 2H). This result suggested that mNanog does not affect canonical Wnt signaling in the embryos stages we examined.

mNanog subsidiary utilizes Activin-nodal signaling for dorsal-mesoderm induction

Previously, it was shown that both mesoderm and endoderm formation requires activation of Activin/nodal signaling. Thus, we next examined whether the expression of Xnr genes is induced by mNanog. RT-PCR analysis indicated that Xnr1 and Xnr2 expressions were increased in a dose-dependent manner (Fig. 3A). On the other hand, expression of Xnr5/6 was not increased in mNanog-injected AC (Fig. 3B). From these results, we proposed that mesoderm induction by mNanog involves the upregulation of not Xnr5/6, but Xnr1/2. To assess whether mNanog overexpression promotes the nuclear transport of Smad2, we coinjected embryos with mNanog and Smad2GFP [32]. Without mNanog injection, GFP signal was observed in the cytoplasm of AC cells (Fig. 3C), whereas 10 pg of Xnr5 injection promoted a nuclear localization of the GFP signal (Fig. 3E). When 200 pg of mNanog was coinjected, Smad2GFP signal was occasionally observed in nuclei, although the efficiency was low (Fig. 3D). This result suggested that, at least in some cases, mNanog regulates Activin/nodal signaling through Xnr1/2.

Figure 3. Inhibition of nodal signaling did not effectively reduce dorsal mesoderm gene expression induction by mNanog.

A) Xnr1 and Xnr2 expressions were observed in stage-11 ACs injected with 0 pg (lane 3, 4), 200 pg (lane 5, 6), or 400 pg (lane 7, 8) of mNanog, and then treated with Activin A (lane 4, 6, 8). B) Xnr5 and Xnr6 expression were observed in stage-9 ACs injected with 0 pg (lane 3), 200 pg (lane 4), or 400 pg of mNanog. C–E) Change in intracellular localization of Smad2 with mNanog injection. 1 ng of Smad2GFP was coinjected with mNanog into the animal pole region of 2-cell embryos. AC was dissected from the injected embryos at stage 9 and observed. Smad2GFP-injected AC (C, C′, and C″), Smad2GFP and 400 pg of mNanog injected AC (D, D′, and D″), Smad2GFP and 10 pg of Xnr5 injected AC (E, E′, and E″). For nuclear staining in living cells, Hoechst 33342 was used (C′, D′, and E′). The number indicates cells in which GFP signal was detected in nuclei and total GFP-positive cells. Merged images (C″, D″, and E″). Scale bar: 50 µm. White arrow in (D) indicates nuclear localization of GFP signal with the mNanog injection. F) The effect of truncated ALK4 on mesoderm gene induction by mNanog. For positive controls, injection with Xnr5 was also performed. G) The effect of cleavage mutants of Xnr1 (cmXnr1) and Xnr2 (cmXnr2) on mesoderm gene induction by mNanog. As a positive control, we used Xnr2. In (F) and (G), AC was dissected at stage 9 and cultured to stage 11.

Next, to clarify whether mesodermal gene induction was dependent on Activin signaling, coinjection experiments were performed with a truncated form of the type I Activin receptor (tALK4) [15], which acts as a dominant-negative mutant. Indeed, tALK4 clearly suppressed Xnr1, Xnr2, gsc, and chd expressions, but not those of Xbra and xWnt8 (Fig. 3F). When tALK4 was injected, expression of Xnr1 and chd induced by mNanog was slightly suppressed, but Xnr2 and gsc expression was little changed (Fig. 3F, lane 6, 7). We further analyzed the effect of cleavage mutants of Xnr1 and Xnr2 (cmXnr1 and cmXnr2) on mesodermal gene induction by mNanog. Although cmXnr1 and/or cmXnr2 were injected, chd expression was only slightly decreased (Fig. 3G, lane 3–5). With xlim-1, coinjection with both cmXnr1 and cmXnr2 slightly reduced their respective expressions (Fig. 3G, 3rd column, lane 2, 5). Together, these results suggested that mNanog weakly modulates Activin/nodal signaling, but that Activin/nodal signaling is not the main factor in mesoderm gene induction by mNanog.

mNanog modulated dorsal mesodermal marker genes by regulating BMP signaling via Xvent2

We finally examined other marker gene expressions. It is known that dorso-ventral specification in mesodermal tissue involves BMP signaling, and previous reports indicated that Xvent1 and Xvent2 facilitate BMP4 transcription, directing ventral mesodermal cell fate [16]. Our results also showed that Activin treatment induced Xvent1, Xvent2, and BMP4 expressions in AC (Fig. 4A), and when mNanog was injected, these gene expressions were obviously decreased (Fig. 4A, lane 4–6). These results suggested that dorsal mesoderm induction by mNanog is dependent on BMP signaling.

Figure 4. Dorsal mesoderm induction by mNanog was involved with inhibition of BMP signaling.

A) Target genes of BMP signaling were inhibited by mNanog injection, based on the expressions of Xvent1 (1st column), Xvent2 (2nd column), BMP4 (3rd column), and ODC (4th column). 0 pg (lane 3, 4), 200 pg (lane 5), or 400 pg (lane 6) of mNanog was injected into animal poles, which were treated with 10 ng/ml of Activin A (lane 4–6) at stage 9. ACs were harvested at stage 11. B) Co-injection analysis with Xvent2 mRNA. 200 pg of mNanog (lane 2–5) and 0 pg (lane 3), 500 pg (lane 4), 1 ng (lane 5), or 2 ng (lane 6) of Xvent2 were co-injected into animal poles at the 2-cell stage. ACs were dissected at stage 9 and homogenized at stage 11 for RNA preparation. The expressions of several dorsal mesoderm genes (chd, gsc, xlim-1) and BMP4 were analyzed. C) Effect of cycloheximide (CHX) on the induction of mesoderm genes by mNanog. 0 pg (lane 1, 2) or 400 pg (lane 3, 4) of mNanog was injected into animal poles at the 2-cell stage, 0 mg/ml (lane 1, 3) or 40 mg/ml (lane 3, 4) of CHX was added. D) Model of expected mechanism of mesoderm gene induction by mNanog. “X" indicates presumptive factor(s) for regulating both Xvent1/2 and Xnr1/2 expression by mNanog.

Thus, we next examined the effect of coinjecting mNanog and Xvent2. Xvent2 and 200 pg of mNanog gradually inhibited the expressions of chd, gsc, and xlim-1 in a dose-dependent manner (Fig. 4B, 1st–3rd columns). BMP4 expression was detected in normal AC, and mNanog injection inhibited such expression (Fig. 4B, 4th column, lane 2). Interestingly, coinjection of mNanog with Xvent2 rescued the BMP4 expression (Fig. 4B, 4th column, lane 3–5), suggesting that mNanog suppresses Xvent2 transcription, resulting in the decreased BMP4 signaling and promotion of dorsal mesodermal gene expression.

To clarify whether mNanog function directly or indirectly affects the dorsal mesoderm gene expression, we used CHX treatment to block protein translation. Applying CHX to AC inhibited the expressions of chd, gsc, and Xnr2 (Fig. 4C, lane 3, 4), and decreased the expressions of Xvent1 and Xvent2 (Fig. 4C, lane 3, 4). These data suggested that both induction of mesoderm genes and inhibition of Xvent2 expression could be indirectly regulated by mNanog.


In this study, we showed a novel function of the Nanog gene in Xenopus embryo. In the process of LMC analysis with mNanog, we found that mNanog induces elongation of AC and expression of mesoderm marker genes. Both RT-PCR and in situ hybridization showed that mNanog effectively induces dorsal mesoderm marker genes, but not ventral mesodermal genes. This is also shown in Fig. 2G as a difference in marker gene induction between mNanog injection and Activin A treatment.

On the other hand, elongation of Activin A-treated AC was suppressed by mNanog injection (Fig. 1L–M). The expression of ventral mesodermal genes in Activin A -treated AC was inhibited by mNanog in both stage-11 and stage-18 embryos (Fig. 1O and Fig. 2A). This inhibitory effect was also observed by in situ hybridization for Xbra (Fig. 2E, F). Recent study showed Nanog functions like xVent, supporting this result [33]. We think that this effect of mNanog would be due to upregulation of chd and gsc, resulting in downregulation of ventral mesoderm gene expression. In the case of Activin A - treated cap or whole embryo under mesoderm-inducing conditions, upregulation of chd and gsc may drive suppression of the ventral mesoderm gene expression (such as Xbra, Xwnt8, mix, mixer) via gsc and chd. Indeed, as shown in Fig. 2A, dorsal mesoderm gene expression was not decreased by mNanog injection. And, untreated AC showed upregulation of several meso/endoderm genes such as Xwnt8, Cer, and Sox17α. In Zebrafish embryo, depletion of Nanog-like caused inhibition of Sox17expression [34]. Furthermore, it is shown that Xvent1 could not substitute for Nanog function [35]. We think that, in AC cells (without Activin treatment), only upregulation effects could be observed because these ACs have no potential to become ventral mesoderm. In any case, Nanog function in mesoderm formation is thought to be complicated, thus further studies need to be done to clarify detail mechanisms.

The mNanog injection also caused head defect, and results from the TUNEL assay implicated cell death in the anterior (injected) region as an underlying cause. Injection with 400 pg of mNanog induced high lethality in 3-day tadpole (Table S1), confirming the severe effects in mNanog-injected regions. We also propose that ectopic expression of a gene possessing mesoderm-inducing activity could affect normal head development. Indeed, 0.25 pg of Xnr5 injection into animal pole regions caused a similar head defect (data not shown).

In this study, mNanog overexpression promoted neither sia/Xnr3 nor Xnr5/Xnr6 expressions (Fig. 2H, 3B), suggesting that mNanog could not affect early embryonic signaling such as canonical Wnt signaling and maternal Nodal signaling. On the other hand, both Xnr1 and Xnr2 expressions were enhanced by mNanog injection (Fig. 3A). The simplest idea to account for these findings is that mNanog upregulates Xnr1/2 transcription, promoting Activin/nodal signaling and gsc/chd transcription. However, RT-PCR analysis with tALK4, cmXnr1, and cmXnr2 showed that these dominant-negative genes did not effectively inhibit dorsal mesoderm gene expression (Fig. 3F, G). Nevertheless, mNanog actually induced Xnr2, and tALK4 weakly suppressed Xnr1 and chd expression, thus it is suggested that mNanog, at least partially, modulates Xnr signaling and contributes to dorsal mesoderm gene induction.

In Fig. 4, we showed that dorsal mesoderm induction by mNanog is closely involved with inhibition of BMP signaling. Indeed, mNanog injection inhibited Xvent1, Xvent2, and BMP4 gene expressions (Fig. 4A), and coinjection of mNanog with Xvent2 clearly suppressed chd, gsc, and xlim-1 expression (Fig. 4B). Together with the CHX experiment, our data implicated the dorsal mesoderm-inducing activities of mNanog in the modulation of BMP signaling, possibly by indirectly regulating Xvent1/2 expression. Our results can be used to propose a model for the modulation and induction of mesoderm genes (Fig. 4D) In short, mNanog positively regulates Xnr2, but it inhibits expression of BMP factors such as Xvent1/2 and BMP4, resulting in induction of chd and gsc. This function is similar to that of Tsukushi (TSK), which modulates both nodal and BMP signaling [36], suggesting that mNanog might be involved with the regulation of TSK.

Even though our experiments were conducted in an artificial system, we think they are still important in clarifying a novel mechanism involving mNanog function, as well as suggesting a novel means of endogenous mesodermal induction in Xenopus. This proposed mNanog function of mesoderm induction in itself seems opposite to its role in maintaining the undifferentiated state. However, Nanog is a possible target gene of Activin signaling [37], [38], and low doses of Activin A are important in maintaining the pluripotency of ES cells in some conditions [39], [40]. Although our results indicated involvement of mNanog in Activin/nodal signaling, they also suggested that mNanog contributes, at least in part, to the gene regulation mechanism around Activin/nodal signaling that underpins mesoderm formation in Xenopus. We expect that other factors involved with pluripotency, like Oct3/4 and Sox2, could also induce activity similar to that observed with mNanog, although our preliminary findings showed no mesoderm gene induction following coinjection with xSox2 or Oct61 (data not shown).

This study sought to identify the Xenopus gene homolog of mammalian Nanog by using sequences of axolotl and newt [41], [42]. Although we designed six primers in homeodomain and caspase domain (Fig. S1 and M&M section) and performed seven rounds of degenerate PCR using combination of these primers, we failed to find any sequence identified as xNanog, although many identified were similar genes including Xvent1 (6/16) and Hoxd11 (6/16) (Fig. S1). Moreover, whole genome analysis of Xenopus tropicalis revealed no known nucleotide sequence for the XtNanog gene. Further exploration of Xenopus Nanog or another factor that substitutes for Nanog is obviously needed.

Supporting Information

Figure S1.

Summary of the degenerative PCR for cloning of the Xenopus Nanog gene. Upper panel: schematic diagram of Nanog protein. CD, HD, and WR indicate the caspase domain, homeodomain, and tryptophan-rich domain, respectively. U1—2 and L1–4 indicate primer positions for the PCR. Lower panel: summary of degenerative PCR results. In Ex.6, we performed PCR with an amplified product using the U2 and L1 primers as a template. The number of obtained gene fragments is also shown.



Table S1.

The summary of phenotypes in embryos injected with mNanog into AP region.




We thank to Dr. Shuji Takahashi, Dr. Yoshikazu Haramoto, and Prof. Tsutomu Kinoshita for critical discussion. We also thank Dr. Moritoshi Sato for technical supports. Mouse cDNA for mNanog cloning was a kind gift of Dr. Yuko Aihara.

Author Contributions

Conceived and designed the experiments: TM. Performed the experiments: TM AM KI SY SN SM. Analyzed the data: TM AM YI YO SM. Contributed reagents/materials/analysis tools: TM YI YO MA SM. Wrote the paper: TM AM.


  1. 1. Jones CM, Kuehn MR, Hogan BL, Smith JC, Wright CV (1995) Nodal-related signals induce axial mesoderm and dorsalize mesoderm during gastrulation. Development 121: 3651–3662.
  2. 2. Joseph EM, Melton DA (1997) Xnr4: a Xenopus nodal-related gene expressed in the Spemann organizer. Dev Biol 184: 367–372.
  3. 3. Takahashi S, Yokota C, Takano K, Tanegashima K, Onuma Y, et al. (2000) Two novel nodal-related genes initiate early inductive events in Xenopus Nieuwkoop center. Development 127: 5319–5329.
  4. 4. Asashima M, Nakano H, Uchiyama H, Davids M, Plessow S, et al. (1990) The vegetalizing factor belongs to a family of mesoderm-inducing proteins related to erythroid differentiation factor. Naturwissenschaften 77: 389–391.
  5. 5. Sasai Y, Lu B, Steinbeisser H, Geissert D, Gont LK, et al. (1994) Xenopus chordin: a novel dorsalizing factor activated by organizer-specific homeobox genes. Cell 79: 779–790.
  6. 6. Smith WC, Harland RM (1992) Expression cloning of noggin, a new dorsalizing factor localized to the Spemann organizer in Xenopus embryos. Cell 70: 829–840.
  7. 7. Cho KW, Blumberg B, Steinbeisser H, De Robertis EM (1991) Molecular nature of Spemann's organizer: the role of the Xenopus homeobox gene goosecoid. Cell 67: 1111–11120.
  8. 8. Taira M, Jamrich M, Good PJ, Dawid IB (1992) The LIM domain-containing homeo box gene Xlim-1 is expressed specifically in the organizer region of Xenopus gastrula embryos. Genes Dev 6: 356–366.
  9. 9. Grainger RM, Gurdon JB (1989) Loss of competence in amphibian induction can take place in single nondividing cells. Proc Nat Acad Sci USA 86: 1900–1904.
  10. 10. Mitsui K, Tokuzawa Y, Itoh H, Segawa K, Murakami M, et al. (2003) The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells. Cell 113: 631–642.
  11. 11. Takahashi K, Yamanaka S (2006) Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures by Defined Factors. Cell 126: 663–676.
  12. 12. Takahashi K, Tanabe K, Ohnuki M, Narita M, Ichisaka T, et al. (2007) Induction of pluripotent stem cells from adult human embryonic and adult human fibroblasts by Defined Factors. Cell 131: 861–872.
  13. 13. Osada SI, Wright CV (1999) Xenopus nodal-related signaling is essential for mesendodermal patterning during early embryogenesis. Development 126: 3229–3240.
  14. 14. Onuma Y, Takahashi S, Haramoto Y, Tanegashima K, Yokota C, et al. (2005) Xnr2 and Xnr5 unprocessed proteins inhibit Wnt signaling upstream of dishevelled. Dev Dyn 234: 900–910.
  15. 15. Hemmati-Brivanlou A, Melton DA (1992) A truncated Activin receptor inhibits mesoderm induction and formation of axial structures in Xenopus embryos. Nature 359: 609–614.
  16. 16. Onichtchouk D, Gawantka V, Dosch R, Delius H, Hirschfeld K, et al. (1996) The Xvent-2 homeobox gene is part of the BMP-4 signalling pathway controling dorsoventral patterning of Xenopus mesoderm. Development 122: 3045–3053.
  17. 17. Karaulanov E, Knöchel W, Niehrs C (2004) Transcriptional regulation of BMP4 synexpression in transgenic Xenopus. EMBO J 23: 844–856.
  18. 18. Veenstra GJ, Peterson-Maduro J, Mathu MT, van der Vliet PC, Destrée OH (1998) TUNEL Non-cell autonomous induction of apoptosis and loss of posterior structures by activation domain-specific interactions of Oct-1 in the Xenopus embryo. Cell Death Differ 5: 774–784.
  19. 19. Gurdon JB, Fairman S, Mohun TJ, Brennan S (1985) Activation of muscle-specific actin genes in Xenopus development by an induction between animal and vegetal cells of a blastula. Cell 41: 913–922.
  20. 20. Smith JC, Price BM, Green JB, Weigel D, Herrmann BG (1991) Expression of a Xenopus homolog of Brachyury (T) is an immediate-early response to mesoderm induction. Cell 67: 79–87.
  21. 21. Carnac G, Kodjabachian L, Gurdon JB, Lemaire P (1996) The homeobox gene Siamois is a target of the Wnt dorsalisation pathway and triggers organiser activity in the absence of mesoderm. Development 122: 3055–3065.
  22. 22. Suzuki A, Thies RS, Yamaji N, Song JJ, Wozney JM, et al. (1994) A truncated bone morphogenetic protein receptor affects dorsal-ventral patterning in the early Xenopus embryo. Proc Natl Acad Sci U S A 91: 10255–10259.
  23. 23. Christian JL, McMahon JA, McMahon AP, Moon RT (1991) Xwnt-8, a Xenopus Wnt-1/int-1-related gene responsive to mesoderm-inducing growth factors, may play a role in ventral mesodermal patterning during embryogenesis. Development 111: 1045–1055.
  24. 24. Rosa FM (1989) Mix.1, a homeobox mRNA inducible by mesoderm inducers, is expressed mostly in the presumptive endodermal cells of Xenopus embryos. Cell 57: 965–974.
  25. 25. Henry GL, Melton DA (1998) Mixer, a homeobox gene required for endoderm development. Science 281: 91–96.
  26. 26. Bouwmeester T, Kim S, Sasai Y, Lu B, De Robertis EM (1996) Cerberus is a head-inducing secreted factor expressed in the anterior endoderm of Spemann's organizer. Nature 382: 595–601.
  27. 27. Hudson C, Clements D, Friday RV, Stott D, Woodland HR (1997) Xsox17alpha and -beta mediate endoderm formation in Xenopus. Cell 91: 397–405.
  28. 28. Pan G, Pei D (2005) NanogDCD The stem cell pluripotency factor NANOG activates transcription with two unusually potent subdomains at its C terminus. J Biol Chem 280: 1401–1407.
  29. 29. Wang J, Levasseur DN, Orkin SH (2008) Requirement of Nanog dimerization for stem cell self-renewal and pluripotency. Proc Natl Acad Sci U S A 105: 6326–31.
  30. 30. Wylie C, Kofron M, Payne C, Anderson R, Hosobuchi M, et al. (1996) Maternal beta-catenin establishes a ‘dorsal signal’ in early Xenopus embryos. Development 122: 2987–2996.
  31. 31. McKendry R, Hsu SC, Harland RM, Grosschedl R (1997) LEF-1/TCF proteins mediate wnt-inducible transcription from the Xenopus nodal-related 3 promoter. Dev Biol 192: 420–431.
  32. 32. Grimm OH, Gurdon JB (2002) Nuclear exclusion of Smad2 is a mechanism leading to loss of competence. Nat Cell Biol 4: 519–522.
  33. 33. Scerbo P, Girardot F, Vivien C, Markov GV, Luxardi G, et al. (2012) Ventx factors function as Nanog-like guardians of developmental potential in Xenopus. PLoS One 7: e36855.
  34. 34. Xu C, Fan ZP, Müller P, Fogley R, DiBiase A, et al. (2012) Nanog-like regulates endoderm formation through the Mxtx2-Nodal pathway. Dev Cell 22: 625–638.
  35. 35. Schuff M, Siegel D, Philipp M, Bundschu K, Heymann N, et al. (2012) Characterization of Danio rerio Nanog and Functional Comparison to Xenopus Vents. Stem Cells Dev 21: 1225–1238.
  36. 36. Morris SA, Almeida AD, Tanaka H, Ohta K, Ohnuma S (2007) Tsukushi modulates Xnr2, FGF and BMP signaling: regulation of Xenopus germ layer formation. PLoS One 2: e1004.
  37. 37. Xu RH, Sampsell-Barron TL, Gu F, Root S, Peck RM, et al. (2008) NANOG is a direct target of TGFbeta/Activin-mediated SMAD signaling in human ESCs. Cell Stem Cell 3: 196–206.
  38. 38. Vallier L, Mendjan S, Brown S, Chng Z, Teo A, et al. (2009) Activin/Nodal signalling maintains pluripotency by controlling Nanog expression. Development 136: 1339–1349.
  39. 39. James D, Levine AJ, Besser D, Hemmati-Brivanlou A (2005) TGFbeta/Activin/nodal signaling is necessary for the maintenance of pluripotency in human embryonic stem cells. Development 132: 1273–1282.
  40. 40. Beattie GM, Lopez AD, Bucay N, Hinton A, Firpo MT, et al. (2005) ActivinA maintains pluripotency of human embryonic stem cells in the absence of feeder layers. Stem Cells 23: 489–495.
  41. 41. Dixon JE, Allegrucci C, Redwood C, Kump K, Bian Y, et al. (2010) Axolotl Nanog activity in mouse embryonic stem cells demonstrates that ground state pluripotency is conserved from urodele amphibians to mammals. Development 137: 2973–2980.
  42. 42. Maki N, Suetsugu-Maki R, Tarui H, Agata K, Del Rio-Tsonis K, et al. (2009) Expression of stem cell pluripotency factors during regeneration in newts. Dev Dyn 238: 1613–1616.