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Genetic Variations in a PTEN/AKT/mTOR Axis and Prostate Cancer Risk in a Chinese Population

  • Jiawei Chen ,

    Contributed equally to this work with: Jiawei Chen, Pengfei Shao, Qiang Cao

    Affiliation State Key Laboratory of Reproductive Medicine, Department of Urology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China

  • Pengfei Shao ,

    Contributed equally to this work with: Jiawei Chen, Pengfei Shao, Qiang Cao

    Affiliation State Key Laboratory of Reproductive Medicine, Department of Urology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China

  • Qiang Cao ,

    Contributed equally to this work with: Jiawei Chen, Pengfei Shao, Qiang Cao

    Affiliation State Key Laboratory of Reproductive Medicine, Department of Urology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China

  • Pu Li,

    Affiliation State Key Laboratory of Reproductive Medicine, Department of Urology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China

  • Jie Li,

    Affiliation State Key Laboratory of Reproductive Medicine, Department of Urology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China

  • Hongzhou Cai,

    Affiliation State Key Laboratory of Reproductive Medicine, Department of Urology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China

  • Jian Zhu,

    Affiliation State Key Laboratory of Reproductive Medicine, Department of Urology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China

  • Meilin Wang,

    Affiliation Department of Molecular and Genetic Toxicology, Cancer Center of Nanjing Medical University, Nanjing, China

  • Zhengdong Zhang,

    Affiliation Department of Molecular and Genetic Toxicology, Cancer Center of Nanjing Medical University, Nanjing, China

  • Chao Qin ,

    drcjyin@gmail.com (CY); urology_qinchao@163.com (CQ)

    Affiliation State Key Laboratory of Reproductive Medicine, Department of Urology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China

  • Changjun Yin

    drcjyin@gmail.com (CY); urology_qinchao@163.com (CQ)

    Affiliation State Key Laboratory of Reproductive Medicine, Department of Urology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China

Genetic Variations in a PTEN/AKT/mTOR Axis and Prostate Cancer Risk in a Chinese Population

  • Jiawei Chen, 
  • Pengfei Shao, 
  • Qiang Cao, 
  • Pu Li, 
  • Jie Li, 
  • Hongzhou Cai, 
  • Jian Zhu, 
  • Meilin Wang, 
  • Zhengdong Zhang, 
  • Chao Qin
PLOS
x

Abstract

Backgroud

Genetic variations in a PTEN/AKT/mTOR signaling axis may influence cellular functions including cell growth, proliferation and apoptosis, and then increase the individual’s risk of cancer. Accordingly, we explore the association between single nucleotide polymorphisms (SNPs) of these genes and prostate cancer (PCa) in our Chinese population.

Methods

Subjects were recruited from 666 PCa patients and 708 cancer-free controls, and eight SNPs in the PTEN/AKT/mTOR axis were determined by the TaqMan assay. Odds ratios (OR) and 95% confidence intervals (95% CI) were evaluated by logistic regression.

Results

We observed significant associations between PCa risk and mTOR rs2295080 [P = 0.027, OR = 0.85, 95%CI = 0.74–0.98], and AKT2 rs7254617 (P = 0.003, OR = 1.35, 95%CI = 1.11–1.64). When estimated these two SNPs together, the combined genotypes with 2–4 risk alleles (rs2295080 T and rs7254617 A alleles) were associated with an increased risk of PCa compared with 0–1 risk alleles, which was more pronounced among subgroups of age >71 years, smokers, drinkers and no family history of cancer. Results of stratified analyses by cliniopathological parameters revealed that the frequencies of the combined genotypes with 2–4 risk alleles in advanced stage were significantly higher than in localized stage(P = 0.022), but there was no significant association in Gleason score and PSA level.

Conclusion

Our results indicate, for the first time that the two variants in AKT2 and mTOR, particularly the joint genotypes with 2–4 risk alleles may influence PCa susceptibility and progression in Chinese, and the association appeared to be more strong in the subgroup of smokers and drinkers.

Introduction

Prostate cancer(PCa) accounts for one-fourth of all tumors diagnosed in men in the United States, with an estimated 217,730 new cases and 32,050 deaths in 2010 [1]. In contrast, PCa morbidity is strikingly low in Asians. However, the occurrence of PCa has steadily increased in recent years in China [2]. Major risk factors for PCa are age, ethnic origin, lifestyle, environmental factors and genetic variants [3]. Although many people are exposed to these risk factors, only a small portion of the exposed individuals develop PCa, indicating that genetic variation partly contribute to the development and progression of PCa [4]. Hence, it is of great clinical significance to identify more molecular markers for detection and diagnosis of PCa. Among these molecular markers, the associations between gene polymorphisms and predisposition to PCa have been extensively investigated in recent years [5], [6], [7].

Dysregulation in cell proliferation, survival and growth drive the progressive transformation of normal cells toward a malignant phenotype. The PTEN/AKT/mTOR axis plays a crucial role in regulating cell growth, proliferation, apoptosis and drug responses [8], [9], [10]. Upstream, phosphatidylinositol 3′-kinase (PI3K) is deregulated through diverse mechanisms, including activation or overexpression of growth factors and hormones that bind receptor tyrosine kinases such as insulin-like growth factor receptor (IGFR), human epidermal growth factor 2 (HER-2), vascular endothelial growth factor (VEGF), and vascular endothelial growth factor (PDGFR) or mutation in PI3K [11], [12], [13], [14]. Then, the deregulated PI3K activate the kinase cascade of AKT-mTOR, in turn leads to phosphorylation of downstream elements including S6 kinase1(S6K1) and 4E-binding protein1(4E-BP1), generating the cell survival, growth, or apoptosis signal and resulting in protein translation by controlling ribosome biogenesis and ribosomal mRNA translation [15], [16]. The tumor suppressor PTEN is a plasma membrance associated lipid phosphatase acting as a negative regulator of PI3K signal by dephosphorylating phosphatidylinositol trisphosphate(PIP3) [17].

Previously, constitutive activation of the PTEN/AKT/mTOR signaling axis has been firmly established as a major determinant of tumor cell growth and survival in a multitude of solid tumors [18]. Similarly, substantial evidence have demonstrated that the AKT/mTOR was frequently over-expression and PTEN expression was markedly decreased in conditions of proliferative dysregulation and a multitude of solid tumors including PCa [19], [20]. Furthermore, uncontrolled PTEN/AKT/mTOR signaling also leads to poor clinical prognosis of lung, cervical, ovarian, esophageal and bladder cancer [8], [21], [22], [23], [24]. Due to the vital role of PTEN/AKT/mTOR axis in tumor pathophysiology, emerging research on the axis concern its potential as a target of rationally molecular anticancer therapies [15], [25].

As mentioned above, in spite of the well-known role of this pathway in tumor pathogenesis and progression, genetic variants in PTEN/AKT/mTOR genes had not been well studied. Overall, only some association studies assessed the relevance between polymorphism in the pathway and occurrence and prognosis of diverse type tumors, including bladder cancer, colorectal cancer and endometrial cancer [26], [27], [28], [29], [30]. For PCa, just one study had investigated tagging SNP in mTOR pathway and PCa risk in the European Prospective Investigation [31]. In light of the limited valuation of PTEN/AKT/mTOR gene variants, we sought to systemically investigate associations between single nucleotide polymorphisms (SNP), which may modify their expression or activity, and PCa susceptibility and progression in our case-control study in a Chinese population.

Materials and Methods

Ethics Statement

The study was approved by the Institutional Review Board of the Nanjing Medical University, Nanjing, China. At recruitment, written informed consent was obtained from all participants involved in this study.

Study Population

From September 2003 to January 2010, a total of 666 patients with histopathologically confirmed and untreated PCa were prospectively recruited from The First Hospital of Nanjing Medical University, Nanjing, China. All these subjects were genetically unrelated ethnic Han Chinese and were from the Province of Jiangsu. In the interim, a total of 708 cancer-free controls were randomly recruited from healthy subjects who were seeking health care in the outpatient departments at the hospital. The selection criteria for the controls included no individual history of cancer and frequency matching to the cases on age (mean ±5 years). Before recruitment, a standard questionnaire was administered through face-to-face interviews by trained interviewers to collect demographic data, clinical data and related factors, including age, race, tobacco use, alcohol use, and family history of cancer. The clinical stage is classified according to TNM classification system. Localized prostate cancer can be detectable clinically on examination, but has not spread outside the prostate (T1–2N0M0). Advanced cancer means the cancer has spread through the prostatic capsule (T3–4NXMX or TXN1MX or TXNXM1). The Gleason score was estimated by pathologists working at the hospital using the Gleason scoring system. Smoking status, alcohol use, family history of cancer and their subgroups were defined as described previously [5]. After interview, each subject donated 5 ml of blood after written informed consent. The response rate for both case and control subjects was >85%.

SNP Selection

Due to the huge number of SNPs in the human genome, the efficient selection of the SNPs most likely to contribute to phenotypic effects was the first challenge. Therefore, a preferential strategy was created using public databases that provide diverse information on the potential phenotypic risks of SNPs. We selected four core functional genes (PTEN/AKT1/AKT2/mTOR) in the axis. SNPs in PTEN/AKT/mTOR were based on HapMap data (http://hapmap.ncbi.nlm.nih.gov/) and PubMed data(http://www.ncbi.nlm.nih.gov/projects/SNP/). The potentially functional polymorphisms were identified according to the following standard: (1) located in the 5′ flanking regions, 5′ untranslated region (UTR), 3′ UTR, and coding regions with amino acid changes; (2) minor allele frequency (MAF) >5% in Chinese population; (3) associated with PCa risk in previous studies. When some of the SNPs were in complete linkage disequilibrium (r2 = 1), only one SNP was selected for genotyping. According to the standard, we selected eight SNPs. Among of them, two SNPs(rs11202607 and rs701848 in 3′UTR) in PTEN, two SNPs(rs2494750 and rs2498786 in 5′flanking regions) in AKT1, two SNPs(rs7254617 in 5′flanking regions and rs33933140 in 3′UTR) in AKT2 and two SNPs(rs2536 in 3′UTR and rs2295080 in 5′flanking regions) in mTOR.

DNA Extraction and Polymorphism Genotyping

Genomic DNA was extracted by proteinase K digestion and phenol–chloroform extraction. The sequence of primer and probe are available as requested. The eight selected SNPs of the PTEN/AKT/mTOR axis genes were determined using the TaqMan technology (Applied Biosystems, Foster City, CA, USA) according to the manufacturer’s instructions. The ABI PRISM 7900HT Fast Real-Time PCR System was used for the genotyping assay. Sequence Detection Systems software (SDS 2.3, Applied Biosystems) was used to automatically collect and analyze the data and to generate the genotype calls. For quality control, the genotyping analysis was performed in a blind manner. A 10% masked, random sample of cases and controls was randomly selected for repeated genotyping and all results were 100% concordance.

Statistical Analysis

A goodness-of-fit chi-square test was used to detect the genotype distribution deviations from HWE. Differences in the distributions of demographic characteristics, selected variables, and frequencies of genotypes between cases and controls were analyzed using the Student’s t-test (for continuous variables) or chi-square test (for categorical variables). Odds ratios (ORs) and their corresponding 95% confidence intervals (CIs) were calculated for each SNP in association with PCa using an unconditional logistic regression model, with and without adjustment for confounding where appropriate. Potential modification of the effect of polymorphism on the risk of PCa was evaluated for the possible confounding factors by addition of interaction terms in the logistic model and by respective analyses of stratification of individuals determined by these factors. All statistical tests were two sided and carried out using the SAS 9.1.3(SAS Institute, Cary, NC) and P value <0.05 was regarded as statistically significant.

Results

Characteristics of Study Population

The selected characteristics of 666 patients and 708 controls are listed in Table 1. Overall, the cases and controls appeared to be well matched regarding age (P = 0.723). The mean age of PCa patients was 71.4 years and that of controls was 71.3 years. Yet, a significantly higher proportion of the cases were of smoking, drinking and positive for family history compared with controls (P = 0.013, P = 0.023, P<0.001, respectively). Furthermore, when according to the clinicopathologic parameters, 391(58.7%) of the 666 patients were in localized stage, the rest were in advanced stage. Approximately 58.9% of the patients PSA value >20 ng/ml and 41.1% ≤20 ng/ml. In addition, the percent of Gleason score from <7,  = 7 and >7 was 33.6%, 33.3% and 33.1%, respectively.

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Table 1. Demographic and clinical variables of Prostate cancer cases and controls.

http://dx.doi.org/10.1371/journal.pone.0040817.t001

Distribution of the PTEN/AKT/mTOR Genotype between Cases and Controls

Table 2 summarized the genotype and allele distributions of SNPs among the cases and controls. The observed genotype frequencies of these eight SNPs in the controls were all in agreement with HWE (P>0.05). As shown in Table 2, for mTOR rs2295080, the genotype and allele distributions were crucially different between PCa cases and controls in the dominant mode (OR = 0.77, 95%CI = 0.61–0.98, P = 0.021). Moreover, the individuals carrying G allele had a significantly decreased risk of PCa compared with those carrying T allele (OR = 0.86, 95%CI = 0.74–0.98, P = 0.027). For AKT2 rs7254617, the frequencies of the GG, GA and AA genotype among the cases were different from those among controls (P = 0.01), these discrepancies principally derived from a higher frequency of the GA genotype among cases by comparison with controls (25.8% versus 19.5%). Based on logistic regression analysis with adjustment for confounding factors, we used the most common GG genotype as reference, individuals harboring GA/AA genotype had a vital increased susceptibility to PCa compared with those carrying GG genotype(OR = 1.46, 95%CI = 1.13–1.88). However, no differences in the frequencies of the remaining SNPs in the PTEN/AKT/mTOR were observed between PCa cases and controls.

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Table 2. SNPs in the PTEN/AKT/mTOR axis associated with the prostate cancer risk.

http://dx.doi.org/10.1371/journal.pone.0040817.t002

Combined Analysis between mTOR rs2295080 and AKT2 rs7254617 Polymorphisms and PCa Susceptibility

In light of possible combined effects from different variants or genotypes and potential interactions of PTEN/AKT/mTOR gene polymorphism on the risk of PCa, we then combined the two SNPs based on the number of the putative risk allele (rs2295080 T and rs7254617 G allele which appeared to be statistically associated with an increased risk of PCa). As listed in Table 3, we detected that the numbers of individuals with risk allele were different between cases and controls (P = 0.011). A larger percent of individuals carrying two or three risk alleles and fewer individuals with one risk alleles were discovered in the patients than in the controls. Furthermore, we dichotomized the combined risk alleles into two groups by the number of risk alleles and used the combined genotypes with 0–1 risk alleles as the reference, we found that genotypes with 2–4 risk alleles were in accordance with a statistically significantly increased susceptibility to PCa(OR = 1.41, 95%CI = 1.12–1.79, P = 0.004).

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Table 3. Frequency distributions of the combined genotypes of rs2295080 T > G and rs7254617 G > A among the cases and controls, and the correlation to risk of PCa.

http://dx.doi.org/10.1371/journal.pone.0040817.t003

Stratification Analysis of the Association of Combined Genotypes and Risk of PCa

We further surveyed the effect of the combined genotypes of rs2295080 and rs7254617 polymorphisms on PCa risk stratified by age, smoking status, pack-years, drinking status and family history of cancer (Table 4). We found that the association between combined risk alleles and PCa risk were more evident in individuals who were more than 71 years(adjusted OR = 1.53, 95%CI = 1.10–2.13, P = 0.01), smoking(adjusted OR = 1.37, 95%CI = 1.01–1.88, P = 0.026), who were heavy smokers(pack-years>22.5, adjusted OR = 1.56, 95%CI = 1.03–2.37, P = 0.018), drinking(adjusted OR = 1.82, 95%CI = 1.16–2.85, P = 0.009) and without family history of cancer(adjusted OR = 1.44, 95%CI = 1.12–1.85, P = 0.006). However, no statistical evidence was found for any interactions between the combined genotypes and confounding factors (data not shown).

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Table 4. Stratification analysis of the variant number of genotypes by selected variables in PCa patients and controls.

http://dx.doi.org/10.1371/journal.pone.0040817.t004

Association between the Combined Genotypes and Progression of PCa

We performed stratification analysis to explore the association between polymorphisms of PTEN/AKT/mTOR genes and various clinicopathological characteristics of PCa. No significant differences were observed between SNPs in PTEN/AKT/mTOR gene and progression of PCa(data not shown). However, in the combined analysis (Table 5), there was an important correlation between the combined genotypes and clinical stage. We found that the frequencies of patients with 2–4 risk alleles in the advanced stage of PCa(77.8%) were much higher than in the localized stage(69.8%) (P = 0.022).

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Table 5. Association between the combined genotypes of polymorphisms and clinicopathologic parameters of PCa.

http://dx.doi.org/10.1371/journal.pone.0040817.t005

Discussion

Up to date, growing evidences have validated that the PTEN/AKT/mTOR axis are universally activated in numerous cancers including PCa, and inhibitors of these core genes are displaying great promise as the latent anticancer agents [32], [33], [34]. Meanwhile, the discovery of genetic variables in susceptibility to various cancers is presently topics focus of extensive epidemiological studies. Therefore, we estimate whether these SNPs may influence the susceptibility and progression of PCa.

In the current study with a relatively comprehensive selection of SNPs in the PTEN/AKT/mTOR axis, we surveyed the associations between the eight potentially functional SNPs and PCa risk. The major finding was that significant associations had been identified between SNPs in AKT2 gene rs7254617, mTOR gene 2295080 and PCa susceptibility. We observed that AKT2 rs7254617A allele was associated with a significantly increased risk of PCa compared with G allele. For mTOR rs2295080 polymorphism, with the TT genotype as reference, the TG/GG genotypes were associated with statistically decreased risk of PCa. But we did not find any crucial associations between the remaining SNPs and PCa risk. Substantial evidences were proposed to support our results. Previously, mutations such as single amino acid changes which were clustered in the kinase active sites by genetic approaches using yeast conferred the constitutive hyperactivation of mTOR and somatic aberrations of PTEN/AKT/mTOR axis genes had been generally observed in various cancers including PCa [35], [36], [37], [38], [39]. Some immunohistochemistry studies had shown the elevated expressions of phospho-Akt, phospho-mTOR were observed in PCa tissues compared with benign prostatic hyperplasia(BPH) and high-grade prostatic intraepithelial neoplasia(HGPIN) tissues [40], [41], [42]. Moreover, a quantity of groups had being performing the preclinical trials to identify PCa that respond to the PTEN/AKT/mTOR inhibitors, either alone or in combination with other therapies in vitro and in vivo models [25], [43], [44], [45]. It was biologically plausible that genetic variations in the PTEN/AKT/mTOR axis may contribute to the PCa by influencing the expression of these core genes. Although we did not find any evidence published on the function of the two SNPs in the promoter of genes, given the location where these SNPs located and in silico analysis, the T to G base change of rs2295080 may change the predicted binding of the Cap and GATA-1 transcription factors, subsequently resulting in a decrease of the mTOR gene expression. Regarding rs7254617, we did not find the possible distinct binding with transcription factors by the web-based SNP analysis tool, TFSEARCH 1.3 (http://www.cbrc.jp/research/db/TFSEARCH.html). One possible explanation was that the association between rs7254617 SNP and PCa risk might be mediated by linkage disequilibrium with other causal loci which might affect the protein expression. Further functional experiments of these two SNPs were required to demonstrate our results. Additionally, despite multiple lines of evidence had verified that mutation of PTEN was indeed a commonly detected in different types of malignancy including PCa [46], [47], but our results indicated that there was no discrepancy in the genotype distributions of the two SNPs(rs11202607 and rs710848) in the functional regions of PTEN between PCa cases and controls, consistent with the results in PCa reported by Haiman et al [48], they lend conclusive support to our study showing no strong associations between common inherited variation in PTEN and PCa risk in multi-race including African-American, Native Hawaiian, Japanese, Latina and White man. One possibility was that the molecular mechanisms, such as epigenetic inactivation, loss of heterozygosity (LOH) and deletion of PTEN not SNP in PTEN, might lead to a true loss of function and subsequently contribute to PCa.

Furthermore, we observed that the joint genotypes with 2–4 risk alleles were significantly associated with the increased risk of PCa, supporting the perspective that the combined analysis could provide a comprehensive estimation of genetic susceptibility in candidate genes with low penetration and consequently improve risk prediction compared with a SNP. PCa was a complex disease attributed to multiple environmental and genetic factors, genetic variations in conjunction with environmental factors may provide better insight into the PCa carcinogenesis. Thus we made a subgroup analysis by the expose risk factors, and our results indicated that the joint effect of the two SNPs on risk of PCa were more evident in older than 71, which were supported by large body of evidence, which link DNA damage accumulation with age. We also found a higher risk in drinkers and smokers (particular in those pack-years more than 22.5), suggesting that the putative risk genotypes carriers were at greater risk if they had continuous exposure.

With respect to clinical prognosis, it is interesting to observe that the frequencies of the combined genotypes with 2–4 risk alleles in advanced stage were significantly higher than in localized stage, indicating that the putative risk genotypes were statistically associated with the progression of PCa. Large quantity of supposition had been proposed to provide biologic mechanisms by which the PTEN/AKT/mTOR axis could promote the evolution and metastasis of tumor. Wang et al reported that blocking the CXCR6/AKT/mTOR signaling pathway induces antimetastatic properties in PCa cells [49]. Shimizu et al demonstrated that the AKT/mTOR/p70S6 kinase pathways were involved in biological and clinical aggressiveness progression of PCa in PCa cells and surgical PCa specimens [50]. Sarkar et al found that expression level of p-Akt and p-mTOR were associated with the PCa development and poor progression by using immunohistochemistry, which is similar with the results reported by Malik et al [51]. Moreover, some studies validated that increased expression of p-AKT served as a predictor of biochemical recurrence after radical prostatectomy [52], [53]. Therefore, it is biologically plausible that the putative risk genotypes in PTEN/AKT/mTOR axis are implicated in the progression of PCa, indicating that this pathway is an exciting and rational molecular target for therapy in PCa. However, considering the limited small sample size, we can not rule out the possibility that these observed results are just due to chance. Our conclusion should be interpreted with caution.

In reviewing the results of this study, some limitations of this study should be noted. First, in view of our study is a retrospective hospital-based case-control design, the inherent selection bias and recall bias cannot be entirely excluded. However, the genotype frequency distributions of the selected SNPs among our controls were all confirmed to HWE, suggesting that the selection bias is unlikely to be substantial. Second, we can not obtain detailed survival data from all participants, which limit our ability to explore the relationship between the SNPs in PTEN/AKT/mTOR axis and prognosis and survival of PCa.

In conclusion, to our knowledge, the current study provides the evidence to systematically evaluate inherited genetic variation in the PTEN/AKT/mTOR axis in reference to the pathogenesis and progression of PCa. We have firstly certified that two SNPs in the PTEN/AKT/mTOR axis, particularly in combination, may confer the increased risk of PCa in the Chinese population, even after adjusting for the confounded risk factors. These conclusions may broaden our horizons in the biological basis of carcinogenesis of PCa. Nevertheless, our findings need to be confirmed by additional population-based prospective studies with detailed survival data in different ethnic groups.

Author Contributions

Conceived and designed the experiments: CY CQ JC. Performed the experiments: PS QC PL JL. Analyzed the data: JC QC HC. Contributed reagents/materials/analysis tools: JZ MW ZZ. Wrote the paper: JC.

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