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Mll5 Is Required for Normal Spermatogenesis

  • Damian B. Yap,

    Affiliations Department of Molecular Oncology, British Columbia Cancer Research Centre, Vancouver, British Columbia, Canada, Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, British Columbia, Canada

  • David C. Walker,

    Affiliation Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, British Columbia, Canada

  • Leah M. Prentice,

    Affiliations Department of Molecular Oncology, British Columbia Cancer Research Centre, Vancouver, British Columbia, Canada, Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, British Columbia, Canada

  • Steven McKinney,

    Affiliation Department of Molecular Oncology, British Columbia Cancer Research Centre, Vancouver, British Columbia, Canada

  • Gulisa Turashvili,

    Affiliation Department of Molecular Oncology, British Columbia Cancer Research Centre, Vancouver, British Columbia, Canada

  • Katrin Mooslehner-Allen,

    Affiliation Department of Paediatrics, Addenbrooke's Hospital, Cambridge, United Kingdom

  • Teresa Ruiz de Algara,

    Affiliation Department of Molecular Oncology, British Columbia Cancer Research Centre, Vancouver, British Columbia, Canada

  • John Fee,

    Affiliation Department of Molecular Oncology, British Columbia Cancer Research Centre, Vancouver, British Columbia, Canada

  • Xavier d'Anglemont de Tassigny,

    Affiliation Physiological Laboratory, Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, United Kingdom

  • William H. Colledge,

    Affiliation Physiological Laboratory, Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, United Kingdom

  • Samuel Aparicio

    saparicio@bccrc.ca

    Affiliations Department of Molecular Oncology, British Columbia Cancer Research Centre, Vancouver, British Columbia, Canada, Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, British Columbia, Canada

Mll5 Is Required for Normal Spermatogenesis

  • Damian B. Yap, 
  • David C. Walker, 
  • Leah M. Prentice, 
  • Steven McKinney, 
  • Gulisa Turashvili, 
  • Katrin Mooslehner-Allen, 
  • Teresa Ruiz de Algara, 
  • John Fee, 
  • Xavier d'Anglemont de Tassigny, 
  • William H. Colledge
PLOS
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Abstract

Background

Mll5 is currently a member of the Mll family of SET domain histone methyltransferase proteins but studies have also showed that it could be part of the SET3 branch of proteins. Recently, constitutive knock out animal studies have shown that Mll5 is required for proper haematopoietic stem cell differentiation, and loss of Mll5 results in synthetic lethality for genome de-methylation. Mll5 deficient male mice are infertile and here we analyse the consequences of Mll5 deficiency for spermatogenesis.

Methodology/Principal Findings

Mll5 deficient male mice, but not female mice, are infertile. Here we show using RNA in-situ hybridization that Mll5 is expressed in the germ cells of the testes of wild type mice. Consistent with the expression of Mll5, we demonstrate by electron microscopy, video microscopy and in vitro fertilisation techniques that Mll5 deficient mice have defects in terminal maturation and packaging of sperm. The defects seen include detachment of the acrosomal cap and impaired excess cytoplasm removal. Functional tests of sperm motility show a lack of progressive motility of spermatozoa from Mll5 deficient animals. None of these defects could be rescued by in vitro fertilization. Using microarray analysis we show that transcripts implicated in spermatogenesis are dysregulated.

Conclusions/Significance

Our data demonstrate a clear role of Mll5 in mammalian spermatogenesis at the level of terminal differentiation providing further support for its classification in the SET3 branch of proteins. Moreover, this study identifies Tlk2, Utx, Gpr64, Sult4a1, Rap2ip, Vstm2 and HoxA10 as possible Mll5 targets that together may account for the observed spermatozoa maturation defects.

Introduction

Spermatogenesis occurs in most male mammals throughout their lifetime. Successful self-renewal of the spermatogonial stem cells underpins this process [1], which comprises three distinct phases [2]. The first involves the mitotic proliferation of the germs cells, spermatogonia and differentiation into primary spermatocytes, which then proceed into meiosis, the second phase, to form haploid spermatids. The round haploid spermatids then elongate, condense their chromatin by replacing histones with protamines [3], develop an acrosomal cap, a tail assembly packed with mitochondria, and shed excess cytoplasm, all in the third and final phase of differentiation, termed spermiogenesis [4]. This phase culminates in the release of spermatozoa into the lumen of the seminiferous tubules. As a by-product of spermiogenesis, residual bodies containing excess cytoplasm from late stage spermatids are released into the lumen of the seminiferous tubules. These must be removed by phagocytosis by the Sertoli cells [5]. Spermatozoa are then drained from the seminiferous tubules into the epididymides and seminal vesicles for storage.

It has been reported that independently generated knockout mouse models of Mll5 have a post meiotic spermatogenic phenotype [6][7]. The mammalian Mll proteins (Mll1-5, from original identification in mixed lineage leukemias) are structurally and functionally homologous to the Drosophila Trithorax proteins [8] and all contain a plant homeodomain (PHD) zinc finger motif and a conserved Su(var)3,9, enhancer of zest, Trithorax (SET) domain. Structural and biochemical analysis of SET domains have revealed their histone methyltransferase function associated with histone H3 Lys-4 (K4) methylation [9]; [10], and PHD fingers have been shown to act as recognition motifs for histone modifications [11].

Mll5 (KMT2E) was initially assigned to this family in part due to the sequence similarity of its PHD and SET domains to those of Mll. However, recent studies suggest that both human MLL5 and mouse Mll5, and the murine paralog, Setd5, have SET domains that are closer in sequence to the yeast SET3 and SET4 proteins [12]; [13]. Until recently, intensive attempts to detect the biochemical activity of yeast SET3 or mammalian Mll5 had failed. This may be due to the fact that glcNAcylation of mammalian Mll5 is required to confer H3K4 methylation activity [10]. Emerging experimental evidence suggests that Mll5 may be the functional homolog of the S. cerevisiae SET3; Mll5 was found to be part of the NCOR complex which is believed to be functionally similar to the SET3C complex [14][15] and siRNA knock down of several components (mammalian homologs of individual members of the yeast SET3 complex) in human cells phenocopies knock down of MLL5, consistent with the hypothesis that they may be part of the same complex [16].

Recently, our group and two others have described mouse knockout models for Mll5. Mll5 appears not be essential for embryonic development [6] [7]; [17], although reduced viability was reported and all three models show hematopoietic defects. Initial phenotypic characterisation of these models focussed on these hematopoietic defects.

Gametogenesis has not been examined in detail in the Mll5 knockout mice, however male infertility was noted in two of the initial reports [6]; [7]. Interestingly, in yeast, the deletion of set3 (Δset3), resulted in normal vegetative growth and development [18], but reduced viable ascus formation caused by the deregulation of sporulation genes during meiosis but not during vegetative growth [18]. The molecular mechanism(s) by which SET3 regulates genes involved in yeast gametogenesis is not known. However, it is conceivable that it interacts with nucleosomes via its PHD domain [11], bringing with it a protein complex containing histone modifying enzymes which exert their activity and regulate gene expression involved in gametogenesis [18].

In this report we show using electron microscopy, video microscopy and in vitro fertilisation techniques that male fertility is impaired in Mll5tm1Apa mice, due to multiple defects in terminal spermatozoa differentiation / maturation. Thus providing further experimental evidence supporting that idea that Mll5 is that functional homolog of yeast SET3. We also show specific deregulation of several important gene transcripts in the testis, which may be putative targets of Mll5 regulation.

Results

Homozygous Mll5tm1Apa male mice are infertile

The generation of a loss of function allele for Mll5 is described in detail elsewhere [6]. Briefly, we generated Mll5tm1Apa by insertion of a β-galactosidase (β-Gal) reporter cassette and neomycin resistance cassette under an independent promoter (MC1) in coding exon 3 of the murine Mll5 locus (exon 4 in ENSMUST000000094962) in 129S6 (129SvEv) embryonic stem cells resulting in the deletion of 180 bp of coding sequence. This disrupts the 5′-most coding exon generating a frame shift. This allele (with the resistance cassette in place) was passed to the germline and backcrossed twice to 129S6 wild type mice before intercrossing. The loss of full-length mature Mll5 protein was verified by Western blotting [6]. Homozygous Mll5tm1Apa male and female mice can survive through adulthood but display pleiotropic haematopoietic and maturation defects [6] [17]. Importantly, heterozygous Mll5tm1Apa intercrosses result in Mendelian ratios of homozygous, heterozygous and wild type pups at embryonic day 16.5, although non-Mendelian ratios were observed later in development, likely due to loss of homozygous pups between birth and weaning secondary to an immune defect [6].

No Mll5tm1Apa homozygous mating pairs produced offspring, or evidence of pregnancies. To determine whether one or both sexes were affected, we first analyzed reciprocal matings of wild type males with homozygous females and wild type females with homozygous males over a 4-month period. Mll5tm1Apa female mice are fertile but exhibit a possible rearing defect (Data S1 and Table S1). In contrast, homozygous Mll5tm1Apa males caged with wild type females did not produce live offspring, nor evidence of pregnancies, showing that homozygous Mll5tm1Apa males are infertile, although secondary sexual characteristic (Data S1), hormone levels (Table S3) and mating behaviour appeared normal. Table 1 shows that no pregnancies were observed from 11 individual homozygous Mll5tm1Apa male mice even though they had copulated with the female, as evidenced by the presence of a vaginal plug. The rate of pregnancies was significantly lower than that for heterozygous Mll5tm1Apa male mice (Multinomial exact test, p = 3.2×10−7). Heterozygous littermates were able to plug and impregnate female mice with a frequency indistinguishable from wild type (Table 1, Multinomial exact test, p = 0.14).

Mll5 appears to be expressed in testes – the site of male gametogenesis

As current antibodies against Mll5 do not work well on tissue sections (data not shown), we used RT-qPCR, β-Galactosidase (β-Gal) staining and RNA in-situ hybridization to assay and visualize Mll5 expression. The Mll5tm1Apa allele contains the β-Galactosidase (β-Gal) reporter within exon 3 downstream of an internal ribosome entry site (IRES), allowing for expression of the β-Gal enzyme when the Mll5tm1Apa transcript is synthesized from the endogenous Mll5 promoter. Whole-mount β-Gal staining confirmed the presence of the knock out allele (Figure 1A) and RT-qPCR demonstrated the loss of wild type allele expression (Figure 1B) in the testes of Mll5tm1Apa homozygous mice. Expression of β-Gal by the Mll5tm1Apa allele in knock out mice and Mll5 mRNA in wild type mice appear to be mainly in developing spermatocytes (sc) and early spermatids (st) (Figure 1D and 1F, respectively). These data show the expression of Mll5 in developing germ cells.

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Figure 1. Mll5 is expressed in the developing germ cells of the testes.

(A) Whole mount β-galactosidase (β-Gal) staining of wild type (+/+) and homozygous Mll5 tm1Apa (-/-) testes. Testes from euthanized mice were dissected, fixed and stained with X-Gal. Image was captured with a Nikon S8 and each gradation represents 1mm. (B) Relative expression as quantified by RT-qPCR using SYBR green dye of the wild type Mll5 transcript as compared to pgk1 in RNA from whole testes of wild type (+/+) and homozygous Mll5 tm1Apa (-/-) mice. The primers that amplify Mll5 mRNA bind within the region of exon 3 that is deleted (and replaced by a β-Gal cassette) in Mll5 tm1Apa [6]. Testes sections of +/+ (C) and -/- (D) mice stained with X-Gal. (E-F) RNA in situ hybridization of +/+ testes sections using Mll5 RNA probe within exon 3. The scale bar represents 20 µm.

https://doi.org/10.1371/journal.pone.0027127.g001

Early gametogenesis appears to be intact in homozygous Mll5 tm1Apa male mice

Given the infertility phenotype of homozygous Mll5tm1Apa male mice and the expression of Mll5 in the developing germ cells of wild type mice, it was conceivable that loss of Mll5 generated by the Mll5tm1Apa allele might impair spermatogenesis. However, we found no gross morphological differences (Data S1 and Figure S1) and mature spermatozoa could be identified in the testes and epididymides, respectively of both genotypes. Additionally, Sertoli cells and other supporting cells appeared normal and showed no obvious morphologic differences (Figures S1), neither was apoptosis significantly elevated in the testes of homozygous Mll5tm1/Apa male mice (Data S1 and Table S4). Furthermore, there were no statistically significant differences in the counts of mature sperm from the distal epididymides and vasa deferentia of wild type and homozygous Mll5tm1/Apa male mice (Table 2), although increased variability in sperm counts from Mll5tm1apa males was noted.

Homozygous Mll5tm1Apa male mice show abnormal sperm morphology

The presence of sperm but absence of gross morphological defects in the testis suggested that defects in spermatogenesis might lie in terminal maturation stages and / or capacitation events. We examined periodic acid Schiff (PAS) stained sections of testes and epididymides by light microscopy and observed significant differences between wild type and homozygous Mll5tm1Apa mice. The corpus epididymides of homozygous Mll5tm1Apa mice contained a marked increase in quantities of indeterminate, weakly PAS-positive globular material compared with wild types (Figure 2B-C, E-F). In addition, a significantly higher proportion (173/298 = 58%) of spermatozoa collected from the epididymis and vas deferens of homozygous Mll5tm1Apa mice showed abnormal head morphology as compared to 11.7% (24/205) from wild type mice (Pearson χ2 (1) = 107, p = 3×10−25, Table 2 & Figure 2A, D). These differences suggested that terminal sperm maturation might be affected.

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Figure 2. Abnormal spermatozoa in epididymides of homozygous Mll5tm1Apa mice.

Comparison of representative spermatozoa and sections of the epididymides from wild-type (A-C) and Mll5 -/- (E-F) mice. (A, D) Fluorescence microscopy of spermatozoa from the cauda epididymis and vas deferens with DNA stain (propidium iodide). Abnormally shaped sperm nuclei are arrowed in D. PAS staining shows an excess of cytoplasmic droplets (arrowed) in the cauda epididymides of the mutant males. Original magnification×100 (A–E) while (C, F) are digitally magnified from (B, E) respectively.

https://doi.org/10.1371/journal.pone.0027127.g002

Homozygous Mll5tm1Apa male mice show multiple defects in terminal sperm maturation

Terminal maturation is a critical step in the production of functional sperm. An electron microscopy survey of spermatozoa present in sixty-three fields from wild-type epididymides and 123 fields from mutant epididymides revealed multiple packaging defects in maturing sperm assemblies from homozygous Mll5tm1Apa mice that were not seen in the wild type testes. When surveyed at similar locations of the caput epididymis (as identified by the presence of pseudocilia in Figure 3A, E), homozygous mutant sperm heads show greater variability in shape (n = 43 out of 53 sperm from -/-) than wild types (n = 0 out of 23 wild type sperm) (arrowheads in Figure 3B, F). This is accompanied by frequent detachment of the forming acrosome (n = 22/53, labelled ‘a’ in Figure 3C, G) from the nucleus containing the compacted chromatin (labelled ‘Nu’ in Figure 3). Abnormal membranous components and an apparent excess of cytoplasm were seen around some acrosomes of sperm head pieces (n = 20/52, Figure 3F). During the normal terminal packaging of sperm, residual cytoplasm is shed into the cytoplasmic droplet (labelled ‘cd’ in Figure 3) at the tail assemblies of sperm from wild type animals (n = 2 fields out of 6 field containing tail assemblies contained such cases), but excess cytoplasm appeared to remain at the acrosomal regions in sperm of homozygous Mll5tm1Apa mice (n = 20/53, Figure 3F, G). Furthermore, abundant cytoplasmic droplets in the epididymides of homozygous Mll5tm1Apa mice were observed (n = 8 fields out of 16 fields containing tail assemblies), in some cases with several tail assemblies pooled into one cytoplasmic droplet (n = 2 out of 8 cases, Figure 3H). We also surveyed terminal maturation in 73 fields from wild type and 23 fields from mutant seminiferous tubules. Evidence of chromatin packaging defects in the nucleus (n = 10/23, Figure 4C), with separation of the acrosomal cap from the nucleus containing condensed chromatin were only observed in homozygous Mll5tm1Apa mice (n = 8/23, Figure 4D); these anomalies were not observed in wild type mice (n = 73), examined at the same time using the same sampling methodology (Figure 4A, B). Taken together, these observations show that a defect exists in the terminal maturation of spermatozoa in Mll5tm1Apa homozygous mice.

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Figure 3. Spermatozoa show multiple subtle defects in homozygous Mll5tm1Apa mice.

Electron micrographs showing spermatozoa in the epididymides of wild type (A–D) and Mll5 tm1Apa homozygous males (E–H). In all sections, the lumen is marked by an asterisk (*). The pseudocilia in the caput epididymis are indicated by arrows (A, E). Arrowheads identify the head regions of spermatozoa for comparison (B–C, F–G), while ‘a’ labels the acrosome cap and ‘Nu’ labels the nucleus containing condensed chromatin. Sections of the tail assembly are shown and ‘cd’ marks the cytoplasmic droplet of developing spermatids. The scale bars represent 2 µm (A, B, E, F), 0.2 µm (C, G) and 1 µm (D, H), respectively.

https://doi.org/10.1371/journal.pone.0027127.g003

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Figure 4. Terminal spermatogenesis is impaired in homozygous Mll5tm1Apa mice.

Morphology of spermatozoa in the seminiferous tubules of testes from wild type (A–B) and Mll5 tm1Apa homozygous males (C–D). In all sections, the lumen is marked by an asterisk (*). Electron micrographs showing the head regions of spermatozoa for comparison, with the letters ‘a’ labelling the acrosome cap and ‘Nu’, the nucleus containing condensed chromatin, respectively. Regions of differences in the mutant from the wild type are indicated by ‘!’. The scale bars represent 0.5 µm (A, C) and 0.2 µm (B, D), respectively.

https://doi.org/10.1371/journal.pone.0027127.g004

In vitro capacitated sperm isolated from the vasa deferentia of homozygous Mll5tm1Apa males exhibited lower proportions of sperm not exhibiting motion than wild type males, but failed to reach statistical significance due to the large variations (Mll5+/+: 29.5 ± 5.0%, Mll5-/-: 47.7 ± 26.0%, ANCOVA F(1,2) = 0.33, p = 0.62; Table 2). Significantly, the movement pattern of sperm that did exhibit motion from mutant mice was significantly slower and showed mostly side-to-side motion, rather than forward swimming, as shown in the attached time-lapse movie (Video S1). Taken together, these data show that Mll5 is required for proper male gametogenesis at the level of terminal maturation of sperm in the testes and/or epididymides.

The sperm maturation defects exhibited by homozygous Mll5tm1Apa male mice cannot be rescued by in vitro fertilization

In spite of the motility defects described above, sperm from homozygous males were found on eggs flushed from oviducts after natural matings (Figure 5B, bottom panel), even though they failed to fertilize the egg; a fertilized egg can be identified by the DNA methylation changes in the two pronuclei as seen in the case of the wild type (Figure 5B, top panel). This suggested that the lack of motility could not fully explain the fertility defect. Moreover, in the homozygous Mll5tm1Apa mice, 41.8% showed apparently normal morphology under high-powered light microscopy. This raised the question of whether morphologically normal sperm were nevertheless impaired for sperm motility capacitation or the ability to penetrate the zona pellucida and fuse with the egg membrane. We therefore decided to test whether the infertility of homozygous Mll5tm1Apa mice could be rescued by sperm capacitated using an in vitro fertilization procedure. The sperm heads could be observed binding to the oocyte in vitro (Figure 5A) as was the case in vivo after natural matings (Figure 5B). However, sperm from homozygous males showed a significant (Pearson χ2 (2) = 67, p = 3x10−15) and severe impairment of their ability to fertilize eggs from superovulated wild type females when identical numbers of sperm were incubated with wild type eggs (Table 3). Only three putative fertilization events (3/194, 1.5%) were recorded with homozygous mutant sperm, compared with 28.9% (50/173 for WT 129SvEv) and 34.1% (43/126 for WT ICR) oocytes with sperm from wild type males. Hence, in vitro capacitated spermatozoa from homozygous Mll5tm1Apa mice are impaired in zona pellucida penetration and in vitro fertilization. Taken together, the data show evidence for multiple levels of defects in the sperm function of homozygous Mll5tm1Apa males, including abnormal terminal maturation/packaging, abnormal motility, and inability to penetrate the zona pellucida and fertilize the egg.

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Figure 5. Impaired spermatozoa of homozygous Mll5tm1Apa mice cannot be rescued by in vitro fertilization.

(A) In vitro fertilization experiments were performed as described. Arrows indicate male pronuclei (in 10 hr panel) and fertilized embryos (in 48 hour panel) as seen under phase contrast microscopy. The data and percentages are given in Table 3. (B) Embryos flushed from the oviducts of naturally mated females with wild type and -/- males respectively at day 0.75 and were stained with PI (red; DNA) and anti-methyl-Cytosine (green; methylated DNA) and imaged by fluorescence microscopy. Sperm (white arrowheads) can be seen binding to the embryos in both cases, whereas fertilization indicated by the methylation pattern of the two pronuclei is only evident in wild type mated mice.

https://doi.org/10.1371/journal.pone.0027127.g005

Transcriptional differences between homozygous Mll5tm1Apa and wild type testes

Given the fact that Mll5 is expressed in the developing germ cells in testes of wild type mice and that spermatogenesis appears to be impaired in homozygous Mll5tm1Apa males, we sought to define the underlying gene expression differences by assaying for deregulated transcripts in the testes of homozygous Mll5tm1apa mice. We isolated total RNA from three wild type and three age-matched homozygous Mll5tm1apa testes and compared the transcriptomes by hybridization to Affymetrix GeneChip Mouse Exon 1.0 Arrays. Three biological replicates for each genotype were compared. We used the exon and transcript (gene) level probeset summarization (Methods) which utilize signals from all exons in a locus to determine transcript level expression. The ratio of expression between wild type and mutant transcripts is summarized in Figure S2. We noted fewer than 961 transcripts showing statistically significant expression differences and short listed genes according the criteria listed in Figure S2 (microarray data from this study may be downloaded at the GEO database with accession number GSE19648). The short listing of transcripts for validation by RT-qPCR came from a longer list of outliers with greater than 1.5 fold change between genotypes and P level of significance<0.05 from both the exon and gene level analyses (Figure S3). We decided to validate by RT-qPCR 27 transcripts (Figure S4) on an additional cohort of three wild type and three homozygous Mll5tm1Apa testes using Eef1a1 as control probe (Methods) for RNA loading. It has been shown [19]; [20] by global microarray analysis that some commonly used “loading controls” can often be affected by the genotype/treatment and that optimal selection of loading controls can be achieved by from microarray comparisons. Eef1a1 was determined to be the optimal reference probe based on whole microarray analysis of variance with genotype.

The short list of transcripts validated included targets from the microarray list as well as other candidate genes such as Hox genes, genes encoding histone modifiers and chromatin proteins as well as genes shown to be misregulated in Δset3 yeast mutants (Figure S4). We also assayed the expression of transcripts encoding mammalian Spo11 and Mre11 which is involved in mammalian and yeast meiosis [21][22]. SPO11 is prematurely up regulated in SET3-deficient yeast, but neither Spo11 nor Mre11 showed statistically significant differences in expression between wild type and homozygous Mll5tm1Apa mice (Figure 6A), consistent with the previous observation of a predominantly post-meiotic gametogenic defect in homozygous Mll5tm1Apa mice.

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Figure 6. Transcriptional differences in testes of wild type and homozygous Mll5tm1Apa mice.

cDNA from testes of three individual age-matched mice of each genotype were used as input for the Q-PCR. The charts show fold change of Mll5 -/- vs wild type (where wild type = 1.0, dotted line) expression levels of the various mRNA as labelled, relative to Eef1a1, of genes (A) involved in meiosis, and (B) representative Hox genes and representative genes significantly up regulated (C) and down regulated (D) in -/- testes. Error bars show the 95% upper and 95% lower confidence levels respectively and significant values (p<0.05) and indicated by the asterisks (*).

https://doi.org/10.1371/journal.pone.0027127.g006

Mll is responsible for the maintenance of Hox gene expression [23]. Furthermore, deregulation of HoxA10 has been linked to male sterility [24] and HoxD9 was found to be unregulated in microarray analyses of testes from homozygous Mll5tm1apa and wild type mice (Figure S3). Hence we postulated that loss of Mll5 might deregulate Hox gene expression. RT-qPCR showed HoxD9 did not show significant expression differences but HoxA10 was significantly repressed 2.6 fold in homozygous Mll5tm1apa testes compared with wild type testes (P = 0.0034) (Figure 6B). Expression of adjacent HoxA9 and paralogous HoxD10 were not significantly altered (Figure 6B). In addition, we found that two genes, Rap2ip and Sult4A1, were significantly up regulated 2.6 fold (p = 3.0×10−9) and 7.9 fold (p = 2.4×10−7) (Figure 6C and Figure S4), respectively in homozygous Mll5tm1apa testes as compared with testes of the wild type mice. Several transmembrane or putative transmembrane proteins, Gpr64 and Vstm2, which were differentially expressed in microarray analyses (Figure S3), also validated in independent RT-qPCR studies on an additional cohort of mice (Figure S4). These genes had 2.0–2.6 fold lower expression (all p<0.05) in homozygous Mll5tm1apa testes compared with wild type testes (Figure S4 and Figure 6D). In addition, the gene encoding a testes-expressed kinase [25] involved in meiosis, Tlk2 was also highly significantly repressed 10.5 fold in homozygous Mll5tm1apa testes compared with wild type testes (p = 1.9×10−13), while transcript Utx, encoding a H3K27-specific histone demethylase that associates with Mll3/4 complexes at Hox genes [26]; [27] was 1.7 fold lower (p = 0.00082) when Mll5 was lost (Figure 6D).

Discussion

In this report, we characterise the phenotype of a loss of function Mll5 mouse in functional and molecular detail. In addition to the obvious sequences similarities of the SET domain of Mll5 to SET3/4 at critical residues (Figure S5), the reported fertility phenotype herein further suggests that Mll5 may be functionally homologous to yeast SET3 [16]. While both Mll5 and SET3 appear to be important for gamete formation, there are obvious differences; loss of SET3C in yeast results in meiotic failure leading to sporulation defect [18], while functional inactivation of Mll5 in mice leads to post-meiotic spermatogenic defect which results in male sterility.

We also show by RT-qPCR and in-situ RNA hybridization that the Mll5 is expressed in the testes, particularly in the developing germ cells of wild type mice (Figure 1). Furthermore, the expression pattern of β-Gal by the mutant allele (Figure 1D) very closely reports wild type Mll5 RNA expression in germ cells (Figure 1F). In addition, our results corroborate and extend previously published findings that show similar Mll5 expression pattern by northern [28], western blot [7] and microarray data showing expression of Mll5 primarily in the germ cells (spermatogonia, developing spermatocytes and early spermatids) as well as somatic (Sertoli) cells of mice [29] and rats [30]. Importantly, independently generated Mll5 knockout mice also show the late stage spermatogenic impairment [7], demonstrating that the presence of foreign elements (in our model) does not alter the phenotype. What the other studies do not address but we show here, is the basis for the sperm defect.

Our breeding experiments show with high statistical confidence that homozygous Mll5tm1Apa male mice are infertile (Table 1). This is not due to a spermatogenic failure since all stages of spermatogenesis were observed (Figure S1), apoptosis was not significantly increased in Mll5 -/- testes (Table S4), nor were sperm counts (Table 2) or testes weight (Table S2) significantly reduced in Mll5 -/- mice. We then go on to show that late stage spermatogenesis or spermiogenesis is impaired in Mll5 -/- mice. The increased proportion of PAS-stained bodies (Figure 2) and sperm with abnormal head morphology (Table 2, Figure 3) and motility (Video S1) in the testes and epididymides of Mll5 -/- mice are consistent with this conclusion. Furthermore, genes encoding proteins involved in meiosis, Spo11 and Mre11, were not significantly altered in the testes of homozygous Mll5tm1Apa mice (as they are deregulated in gametogenesis in yeasts), although detection of premature or delayed expression could be overlooked in our expression analyses of whole testes. Corroborating our conclusion, post-meiotic spermatogenesis has also been observed in an independently generated knock out of Mll5 [7]. Thus, from the data in homozygous Mll5tm1Apa mice, it appears that the loss of Mll5 from developing germ cells results in defects predominantly in the post-meiotic stages of male gametogenesis, although subtle meiotic defects cannot be completely ruled out.

This report also documents for the first time in fine resolution of electron microscopy the structural detail what those defects are. Sperm from the testes and epididymides of Mll5 -/- mice exhibit various defects in spermatozoan maturation such as variations in sperm head morphology, sperm nuclear chromatin compaction and attachment of the nuclear membrane to the acrosome (capping) (Figure 3 & 4). Furthermore, we provide functional evidence that sperm from Mll5 -/- binds to but is unable to fertilize oocytes in in vitro capacitation and fertilization experiments (Figure 5 and Table 3). Such defects are relevant and are consistent with the phenotype.

Thus we conclude that Mll5 is important for normal spermatogenesis as functional inactivation of Mll5 by constitutive knockout in a mouse exhibits male infertility due to defects in late stage spermatogenesis or spermiogenesis resulting in spermatozoa, which are unable to fertilize oocytes in vitro as well as in vivo.

Three groups independently targeted Mll5 in mice and concordantly found that functional inactivation of Mll5 results in a hematopoietic stem cell defect [6] [17] [7]. In order to discover the targets of Mll5 which would help to elucidate the biochemical and molecular mechanism of how Mll5 works in vivo, microarray was performed on flow cytometry-sorted murine bone marrow cells to purify hematopoietic stem cells (HSCs) since that was the population of cells which was found to be defective in the Mll5 -/- mice [17]. Their microarray did not reveal many differences in the HSCs of wildtype and knockout Mll5 mice apart from Hoxb2 and Hoxb5 [31]. In this report, we have shown a clear phenotype in the testes of Mll5 -/- mice and hence assayed differential expression of genes from the testes of wildtype and Mll5 -/- mice using microarray. Unlike differential expression in hematopoietic stem cells, we were able to find over 900 differentially expressed transcripts between wildtype and Mll5 -/- testes. Several genes were found to be differentially expressed in whole mouse testes from wildtype and Mll5 -/- mice by RT-qPCR analyses on independent batches of mice (Figure 6).

The targets identified in our study may provide some possible avenues for future studies on the mechanism of Mll5, though it remains to be determined if these are direct targets of Mll5. Loss of Mll5 appeared to correlate with the repression of HoxA10 but not HoxA9, HoxD9 or HoxD10 (Figure 6B). HoxA10 knockout mice manifest spermatogenic defects [32][33], although obvious cryptorchidism was not observed in homozygous Mll5tm1Apa mice. Another significantly repressed gene, Gpr64 (Figure 6D) also plays an important role in regulating the osmotic environment for spermatozoa maturation in the epididymis and its loss leads to male sterility reminiscent of homozygous Mll5tm1Apa [34]. Tlk2, which was down regulated in Mll5 -/- testes, encodes a serine/threonine kinase which shows significant sequence homology to the Tousled kinase in Arabidopsis (hence its name Tousled-like kinase) and is associated with differentiation of the reproductive organs of plants [25]. Tlk2 mRNA is expressed at high levels in testes, leading to speculation about a role in gametogenesis in mammals, as in plants [35]. Rap2ip (synonyms RPIP8, Rundc3a) was up regulated in both the microarray analyses (Figure S4) and the RT-qPCR validation where it was up regulated 7.9 fold in testes mll5tm1Apa mice, implicating the Ras-signalling pathway [36] in male fertility [37]. Sult4a1, which was up regulated over 2 fold in the testes of mll5tm1Apa mice in the microarray (Figure S3) and RT-qPCR analyses (Figure 6C), encodes a cytosolic sulfotransferase enzyme which is believed to modulate the function of endogenous catecholamines and steroid hormones in the brain [38] however an endogenous substrate for Sult4a1 has not been identified [39]; [40] nor has its role in spermatogenesis been determined.

In this report, we have characterised the role of murine Mll5 in normal gametogenesis. Homozygous Mll5tm1apa mice show impaired late-stage spermatogenesis or spermiogenesis. We have also shown that of the transcriptional differences, several targets are known to be involved in spermatogenesis. These and other targets may explain the phenotype. The mechanisms of the deregulated transcript expression are unknown at present, although it is possible that histone modifications might be involved, given the reported function of Mll5 and the other Mll family members. ChIP grade antibodies have so far proven intractable for Mll5, preventing direct ChIP strategies to analyze the promoters of these genes, however their identification in this report defines them as possible targets for future analysis. The genetic models of Mll5 define it as an essential protein for normal spermatogenesis and haematopoiesis and thus future studies are required to define the complexes in which Mll5 operates and the testes model should aid in those biochemical studies.

Methods

Mouse breeding

All mice were bred and maintained as approved by the University of British Columbia Animal Care Committee (A05-0699) or under the authority of a U.K. Home Office Project License (PPL80/1503). The transgenic mice (Mll5tm1Apa) were maintained as an inbred stock on a 129S6 (129SvEv) genetic background on a high-fat sterile diet. Mating pairs were supplemented with dough diet and sunflower seeds. Genotyping of mice was done by PCR using the primers as described elsewhere [6].

Experiments on mice

For experimental matings, male mice were singly housed overnight before the female was introduced and monitored for the presence of a plug. Mice were euthanized by raising CO2 concentration and blood and/or tissues collected as specified. For the removal of embryos, oviducts or uteri of freshly sacrificed female mice were dissected and then flushed with M2 media (Millipore, MA), incubated with hyaluronidase (Sigma, 10 mg/ml in M2) and washed in M2 or Human Tubal Fluid (HTF) (Millipore, MA).

Staining and hybridization

Testes from euthanized mice were dissected, fixed in 4% paraformaldehyde and stained overnight at 30°C with X-Gal. RNA in situ hybridization was performed on 10–15 µm sections of frozen testes using a 150-bp Mll5 RNA probe within exon 3 using the protocol described before [41] (Methods S1).

Antibody staining

Embryo staining was performed as previously described [42]. Freshly dissected embryos were washed in phosphate buffer solution (PBS) and fixed overnight at 4°C in 4% paraformaldehyde with Polyvinyl alcohol (PVA) (0.1 mg/ml). After fixation, embryos were washed in 0.05% Tween 20 (VWR) and permeabilized in 0.2% Triton X-100 (VWR) for 30 min and after washes in 0.05% Tween 20, incubated for 1 hr at 37°C in 2 N hydrochloric acid. After washing, embryos were incubated with 2% bovine serum albumin (BSA) and methylated DNA was visualized with mouse anti-5-methylcytosine (Calbiochem) (1/500, 1 hr at 37°C) and FITC-conjugated anti-mouse IgG (eBioscience) (1/100, 1 hr at room temperature). DNA was visualized by propidium iodide staining in the mounting medium (Vector Laboratories).

In vitro fertilization experiments

Female ICR mice were superovulated with an intraperitoneal (i.p.) injection of 1.5U pregnant mare serum (PMS, Sigma), followed 48 hr later by an ip injection of 1.5U human chorionic gonadotropin (hCG, Sigma). Thirteen hours after hCG administration, the superovulated female mice were euthanized and the oocytes were harvested and incubated for 4–6 hour with 2.5×105 sperm (diluted to 1−25×106 / ml in capacitation buffer for 30 min before mixing with oocytes) from epididymides and vasa deferentia of wild type (Mll5 +/+) and homozygous Mll5tm1Apa (Mll5 -/-). (ICR strain oocytes but not oocytes from 129S6 mice could be reproducibly fertilized in vitro by sperm of wild type males from both strains). For assessment of fertilization, the number of two cell embryos with an extruded second polar body, 24 hours after fertilization was recorded.

Characterization of mouse sperm

Testes from euthanized male (n = 3 per genotype) mice were removed and the epididymides and vasa deferentia dissected into 3 ml of DMEM and incubated at 37°C / 5% CO2 for 30 min to allow for capacitation of the sperm. An aliquot was then taken and non-motile sperm was counted using a haemocytometer while another aliquot taken to observe sperm using time-lapse microscopy on a Zeiss Colibri AxioObserver.Z1. A third aliquot was fixed in 4% paraformaldehyde and the total number of sperm counted. The number of non-motile sperm was then expressed as a percentage of the total number of sperm. At least 100 single sperm per mouse were analyzed. For imaging, propidium iodide was used in the mounting media and the sperm heads imaged using a Nikon C1 TE2000E2 confocal microscope with a 63x objective.

Electron microscopy

Freshly obtained tissues were fixed in 2.5% glutaraldehyde in a 0.1 M Cacodylate buffer at pH 7.3 for 2 hr and washed in the same buffer lacking glutaraldehyde three times. Next they were fixed in 1% osmium tetroxide and potassium ferrocyanide 1% in the same Cacodylate buffer for one hour followed three rinses in distilled water before being dehydrated through a graded series of Acetone to 100% starting at 30%. After two changes in propylene oxide they were infiltrated with epon 812 and then embedded in the same epoxy resin. 60 to 70 nm thin sections were viewed in the FEI Tecnai 12 Transmission Electron Microscope.

Microarray Analysis and Validation

Total RNA was isolated from three frozen wild type and age-matched homozygous Mll5tm1apa testes using QIAzol™ lysis reagent (Qiagen, Maryland, USA). RNA was extracted according to the manufacturer's instructions (Methods S1) and probed on GeneChip Mouse Exon Array 1.0 ST chips (Affymetrix, Santa Clara, California) for gene expression analysis (Methods S1). Raw intensity calls were normalized using quantile normalization [43] and probeset summarization (core plus extended) undertaken with gc-rma. Outliers with greater than 1.5 fold change between genotypes and level of significance, p<0.05 were selected for further analysis by quantitative PCR (qPCR) (Figure S3).

For validation, quantitative real-time polymerase chain reaction (RT-qPCR) was set up in 384 well plates on the 7900HT Fast Real-Time PCR system (Applied Biosystems, Foster City, CA) with the respective probes (Roche) and primers (Figure S4 and Methods S1). Relative quantification (RQ) of the mutants compared to wild type was determined as 2-ΔΔCt , with ΔΔCt obtained from the parameters of the linear mixed effects model. Tests for genotype effect on gene of interest adjusted for amplification using the endogenous control were carried out using the likelihood ratio test.

Statistical analysis

Pairwise comparisons were performed using Student's t test for continuous variables, and Pearson's chi squared test or Fisher's exact test for categorical variables. Results with a 2-sided P-value less than 0.05 were considered significant. For birth rate variables with a Poisson distribution, birth counts conditional on the total births have a multinomial distribution, from which exact p-values were obtained [44]. For the panel of genes assessed via RT-qPCR, the Benjamini-Hochberg method was used to adjust p-values for multiple comparisons. Only gene targets with adjusted p-values<0.05 were declared significantly differentially expressed. Unadjusted p-values are reported to allow their use in possible future meta-analyses. Statistical analyses were performed with Excel (Microsoft Canada, Mississauga, ON) and the R statistical package (R Foundation for Statistical Computing, Vienna, Austria). Microarray analysis was performed using ArrayAssist version 5.0 (Stratagene, California USA). All microarray data is MIAME compliant and the raw data has been deposited in a MIAME compliant database (GEO accession GSE19648).

Supporting Information

Figure S1.

Gametogenesis is grossly normal in homozygous Mll5tm1Apa mice. Representative sections of haematoxylin and eosin (H & E) stained seminiferous tubules in testis of wildtype (A–B) and Mll5 -/- (E–F) mice showing various different cell types. 1 – spermatogonia; 2 – spermatocytes; 3 – round spermatids; 4 – elongating spermatids; 5 – Sertoli cells, 6 – Leydig cells. Representative sections of H & E stained epididymides of wild-type (C–D) and Mll5 -/- (G–H) mice showing (1) coiled tubules of the epididymis which are (2) lined by columnar epithelium and (3) contain mature spermatozoa. The original magnification was X400 for all panels except for C and G, where the magnification was X100.

https://doi.org/10.1371/journal.pone.0027127.s001

(TIF)

Figure S2.

Representation of Microarray data showing outliers in yellow. Plot of fold change (FC) of transcripts against their respective p-values of the transcriptomes of homozygous Mll5 tm1Apa (KO) to Mll5 +/+ (WT) testes as determined by microarray. The yellow dots show the outliers and transcripts with FC>1.05 and p<0.05.

https://doi.org/10.1371/journal.pone.0027127.s002

(TIF)

Figure S3.

Filtered results from the analysis of the Affymetrix Microarray and status of RT-qPCR validation. Comparisons between genes identified as differentially expressed by microarray and their location on the mouse genome according to Mus musculus, NCBI build 37, 2007-07 from the Core Gene Level analysis between Mll5 -/- (KO) and Mll5 +/+ (WT) testes are shown.

https://doi.org/10.1371/journal.pone.0027127.s003

(TIF)

Figure S4.

Validation of short listed genes by RT-qPCR. This table shows the transcripts, primers and probes used (SYBR = SYBR green used without UPL probes) as well as the relative expression of transcripts in testes of homozygous Mll5 tm1Apa [KO] mice vs wild type [WT] mice. Up regulated transcripts are highlighted in red while down regulated transcripts are highlighted in green. P values that are significant are in red text.

https://doi.org/10.1371/journal.pone.0027127.s004

(PDF)

Figure S5.

Mll5 appears to have similar residues in the SET domain to yeast SET3/4. CLUSTAL 2.0.8 multiple sequence alignment of the SET domains of Mll1(KMT2A) (P552200), Mll4(Wbp7,KMT2D) (O08550), Mll2 (KMT2B) (Q6PDK2), Mll3(KMT2C) (QBR4H), Mll5(KMT2E) (Q3UG20), yeast SET3 (P36124) yeast SET4 (P42948) and Setd7 (Q8VHL1). Conserved structural residues are marked in green and residues important for catalysis in red. Critical residues not conserved are marked in purple.

https://doi.org/10.1371/journal.pone.0027127.s005

(TIF)

Table S1.

Mll5 -/- female mice are fertile.

https://doi.org/10.1371/journal.pone.0027127.s006

(DOC)

Table S2.

Mean testes weights from Mll5 +/+ and -/- mice.

https://doi.org/10.1371/journal.pone.0027127.s007

(DOC)

Table S3.

Mean testosterone levels in Mll5 +/+ and -/- mice.

https://doi.org/10.1371/journal.pone.0027127.s008

(DOC)

Table S4.

Apoptosis in Testes from Mll5 +/+ and -/- mice.

https://doi.org/10.1371/journal.pone.0027127.s009

(DOC)

Data S1.

Supplemental data.

https://doi.org/10.1371/journal.pone.0027127.s010

(DOC)

Methods S1.

Supplemental methods.

https://doi.org/10.1371/journal.pone.0027127.s011

(DOC)

Video S1.

Mll5 -/- female mice are fertile. Time-lapse video microscopy showing differences in motility of sperm from Mll5 +/+ and Mll5 -/- mice.

https://doi.org/10.1371/journal.pone.0027127.s012

(MP4)

Acknowledgments

We would like to thank Alaeddin Tafech for genotyping the mice, Nadia Gale and the Centre for Translational and Applied Genomics (CTAG), Vancouver, BC, for the preparing tissue sections, Leon Poznanski and Center for Genetic Modelling at British Columbia Cancer Agency (BCCA) for technical assistance with the in vitro fertilization work and members of the Animal Research Centre (ARC, BCCRC) for husbandry of the animals. We are also grateful to Darren Saunders and Cath Ennis for reading and commenting on drafts of this manuscript as well as current colleagues of the Molecular Oncology Program of the British Columbia Cancer Research Centre (BCCRC) and former colleagues at the Department of Oncology, University of Cambridge, UK for helpful scientific discussions.

Author Contributions

Conceived and designed the experiments: DY WC SA. Performed the experiments: DY DW LP SM GT KM-A TRdA JF XddT. Analyzed the data: DY DW SM GT XddT WC SA. Contributed reagents/materials/analysis tools: DY LP SM JF TRdA XddT KM-A. Wrote the paper: DY WC SA.

References

  1. 1. Oatley JM, Brinster RL (2008) Regulation of Spermatogonial Stem Cell Self-Renewal in Mammals. Annu Rev Cell Dev Biol 26: 26.JM OatleyRL Brinster2008Regulation of Spermatogonial Stem Cell Self-Renewal in Mammals.Annu Rev Cell Dev Biol2626
  2. 2. Russel LD, Ettlin RA, Hikim AP, Clegg ED (1990) Mammalian spermatogenesis; Testis HaHEot, editor. Florida: Cache River. pp. 1–40.LD RusselRA EttlinAP HikimED Clegg1990Mammalian spermatogenesis; Testis HaHEot, editor.FloridaCache River140
  3. 3. Zhao M, Shirley CR, Mounsey S, Meistrich ML (2004) Nucleoprotein transitions during spermiogenesis in mice with transition nuclear protein Tnp1 and Tnp2 mutations. Biol Reprod 71(3): 1016–1025.M. ZhaoCR ShirleyS. MounseyML Meistrich2004Nucleoprotein transitions during spermiogenesis in mice with transition nuclear protein Tnp1 and Tnp2 mutations.Biol Reprod71310161025
  4. 4. Toshimori K (2003) Biology of spermatozoa maturation: an overview with an introduction to this issue. Microsc Res Tech 61(1): 1–6.K. Toshimori2003Biology of spermatozoa maturation: an overview with an introduction to this issue.Microsc Res Tech61116
  5. 5. Igdoura SA, Morales CR (1995) Role of sulfated glycoprotein-1 (SGP-1) in the disposal of residual bodies by Sertoli cells of the rat. Mol Reprod Dev 40(1): 91–102.SA IgdouraCR Morales1995Role of sulfated glycoprotein-1 (SGP-1) in the disposal of residual bodies by Sertoli cells of the rat.Mol Reprod Dev40191102
  6. 6. Heuser M, Yap DB, Leung M, de Algara TR, Tafech A, et al. (2009) Loss of MLL5 results in pleiotropic hematopoietic defects, reduced neutrophil immune function, and extreme sensitivity to DNA demethylation. Blood 113(7): 1432–1443.M. HeuserDB YapM. LeungTR de AlgaraA. Tafech2009Loss of MLL5 results in pleiotropic hematopoietic defects, reduced neutrophil immune function, and extreme sensitivity to DNA demethylation.Blood113714321443
  7. 7. Madan V, Madan B, Brykczynska U, Zilbermann F, Hogeveen K, et al. (2009) Impaired function of primitive hematopoietic cells in mice lacking the Mixed-Lineage-Leukemia homolog MLL5. Blood 113(7): 1444–1454.V. MadanB. MadanU. BrykczynskaF. ZilbermannK. Hogeveen2009Impaired function of primitive hematopoietic cells in mice lacking the Mixed-Lineage-Leukemia homolog MLL5.Blood113714441454
  8. 8. Dou Y, Milne TA, Ruthenburg AJ, Lee S, Lee JW, et al. (2006) Regulation of MLL1 H3K4 methyltransferase activity by its core components. Nat Struct Mol Biol 13(8): 713–719.Y. DouTA MilneAJ RuthenburgS. LeeJW Lee2006Regulation of MLL1 H3K4 methyltransferase activity by its core components.Nat Struct Mol Biol138713719
  9. 9. Wysocka J, Swigut T, Milne TA, Dou Y, Zhang X, et al. (2005) WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development. Cell 121(6): 859–872.J. WysockaT. SwigutTA MilneY. DouX. Zhang2005WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development.Cell1216859872
  10. 10. Fujiki R, Chikanishi T, Hashiba W, Ito H, Takada I, et al. (2009) GlcNAcylation of a histone methyltransferase in retinoic-acid-induced granulopoiesis. Nature 459(7245): 455–459.R. FujikiT. ChikanishiW. HashibaH. ItoI. Takada2009GlcNAcylation of a histone methyltransferase in retinoic-acid-induced granulopoiesis.Nature4597245455459
  11. 11. Shi X, Kachirskaia I, Walter KL, Kuo JH, Lake A, et al. (2007) Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem 282(4): 2450–2455.X. ShiI. KachirskaiaKL WalterJH KuoA. Lake2007Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36.J Biol Chem282424502455
  12. 12. Sun XJ, Xu PF, Zhou T, Hu M, Fu CT, et al. (2008) Genome-wide survey and developmental expression mapping of zebrafish SET domain-containing genes. PLoS ONE 3(1): e1499.XJ SunPF XuT. ZhouM. HuCT Fu2008Genome-wide survey and developmental expression mapping of zebrafish SET domain-containing genes.PLoS ONE31e1499
  13. 13. Glaser S, Schaft J, Lubitz S, Vintersten K, van der Hoeven F, et al. (2006) Multiple epigenetic maintenance factors implicated by the loss of Mll2 in mouse development. Development 133(8): 1423–1432.S. GlaserJ. SchaftS. LubitzK. VinterstenF. van der Hoeven2006Multiple epigenetic maintenance factors implicated by the loss of Mll2 in mouse development.Development133814231432
  14. 14. Lanz RB, Jericevic Z, Zuercher WJ, Watkins C, Steffen DL, et al. (2006) 34. (Database issue): pp. D221–226.RB LanzZ. JericevicWJ ZuercherC. WatkinsDL Steffen200634Database issueD221226Nuclear Receptor Signalling Atlas (www.nursa.org): hyperlinking the nuclear receptor signalling community. Nucleic Acids Res. Nuclear Receptor Signalling Atlas (www.nursa.org): hyperlinking the nuclear receptor signalling community. Nucleic Acids Res.
  15. 15. Nuclear Receptor Signalling Atlas (NURSA) website. 11: Nuclear Receptor Signalling Atlas (NURSA) website.11Available: www.nursa.org/10.1621/datasets.01002. Accessed 2011 Oct. Available: www.nursa.org/10.1621/datasets.01002. Accessed 2011 Oct.
  16. 16. Kittler R, Pelletier L, Heninger A-K, Slabicki M, Theis M, et al. (2007) Genome-scale RNAi profiling of cell division in human tissue culture cells. Nat Cell Biol 9(12): 1401–1412.R. KittlerL. PelletierA-K HeningerM. SlabickiM. Theis2007Genome-scale RNAi profiling of cell division in human tissue culture cells.Nat Cell Biol91214011412
  17. 17. Zhang Y, Wong J, Klinger M, Tran MT, Shannon KM, et al. (2009) MLL5 contributes to hematopoietic stem cell fitness and homeostasis. Blood 113(7): 1455–1463.Y. ZhangJ. WongM. KlingerMT TranKM Shannon2009MLL5 contributes to hematopoietic stem cell fitness and homeostasis.Blood113714551463
  18. 18. Pijnappel WWMP, Schaft D, Roguev A, Shevchenko A, Tekotte H, et al. (2001) The S. cerevisiae SET3 complex includes two histone deacetylases, Hos2 and Hst1, and is a meiotic-specific repressor of the sporulation gene program. Genes Dev 15(22): 2991–3004.WWMP PijnappelD. SchaftA. RoguevA. ShevchenkoH. Tekotte2001The S. cerevisiae SET3 complex includes two histone deacetylases, Hos2 and Hst1, and is a meiotic-specific repressor of the sporulation gene program.Genes Dev152229913004
  19. 19. Popovici V, Goldstein D, Antonov J, Jaggi R, Delorenzi M, et al. (2009) Selecting control genes for RT-QPCR using public microarray data. BMC Bioinformatics 10(1): 42.V. PopoviciD. GoldsteinJ. AntonovR. JaggiM. Delorenzi2009Selecting control genes for RT-QPCR using public microarray data.BMC Bioinformatics10142
  20. 20. Saviozzi S, Cordero F, Iacono M, Novello S, Giorgio S, et al. (2006) Selection of suitable reference genes for accurate normalization of gene expression profile studies in non-small cell lung cancer. BMC Cancer 6(1): 200.S. SaviozziF. CorderoM. IaconoS. NovelloS. Giorgio2006Selection of suitable reference genes for accurate normalization of gene expression profile studies in non-small cell lung cancer.BMC Cancer61200
  21. 21. Romanienko PJ, Camerini-Otero RD (2000) The mouse Spo11 gene is required for meiotic chromosome synapsis. Mol Cell 6(5): 975–987.PJ RomanienkoRD Camerini-Otero2000The mouse Spo11 gene is required for meiotic chromosome synapsis.Mol Cell65975987
  22. 22. Goedecke W, Eijpe M, Offenberg HH, van Aalderen M, Heyting C (1999) Mre11 and Ku70 interact in somatic cells, but are differentially expressed in early meiosis. Nat Genet 23(2): 194–198.W. GoedeckeM. EijpeHH OffenbergM. van AalderenC. Heyting1999Mre11 and Ku70 interact in somatic cells, but are differentially expressed in early meiosis.Nat Genet232194198
  23. 23. Yu BD, Hess JL, Horning SE, Brown GA, Korsmeyer SJ (1995) Altered Hox expression and segmental identity in Mll-mutant mice. Nature 378(6556): 505–508.BD YuJL HessSE HorningGA BrownSJ Korsmeyer1995Altered Hox expression and segmental identity in Mll-mutant mice.Nature3786556505508
  24. 24. Podlasek CA, Seo RM, Clemens JQ, Ma L, Maas RL, et al. (1999) Hoxa-10 deficient male mice exhibit abnormal development of the accessory sex organs. Dev Dyn 214(1): 1–12.CA PodlasekRM SeoJQ ClemensL. MaRL Maas1999Hoxa-10 deficient male mice exhibit abnormal development of the accessory sex organs.Dev Dyn2141112
  25. 25. Shalom S, Don J (1999) Tlk, a novel evolutionarily conserved murine serine threonine kinase, encodes multiple testis transcripts. Mol Reprod Dev 52(4): 392–405.S. ShalomJ. Don1999Tlk, a novel evolutionarily conserved murine serine threonine kinase, encodes multiple testis transcripts.Mol Reprod Dev524392405
  26. 26. Lee MG, Villa R, Trojer P, Norman J, Yan KP, et al. (2007) Demethylation of H3K27 regulates polycomb recruitment and H2A ubiquitination. Science 318(5849): 447–450.MG LeeR. VillaP. TrojerJ. NormanKP Yan2007Demethylation of H3K27 regulates polycomb recruitment and H2A ubiquitination.Science3185849447450
  27. 27. Cho YW, Hong T, Hong S, Guo H, Yu H, et al. (2007) PTIP associates with MLL3- and MLL4-containing histone H3 lysine 4 methyltransferase complex. J Biol Chem 282(28): 20395–20406.YW ChoT. HongS. HongH. GuoH. Yu2007PTIP associates with MLL3- and MLL4-containing histone H3 lysine 4 methyltransferase complex.J Biol Chem282282039520406
  28. 28. Emerling BM, Bonifas J, Kratz CP, Donovan S, Taylor BR, et al. (2002) MLL5, a homolog of Drosophila trithorax located within a segment of chromosome band 7q22 implicated in myeloid leukemia. Oncogene 21(31): 4849–4854.BM EmerlingJ. BonifasCP KratzS. DonovanBR Taylor2002MLL5, a homolog of Drosophila trithorax located within a segment of chromosome band 7q22 implicated in myeloid leukemia.Oncogene213148494854
  29. 29. Mammalian Reproductive Genetics Website. 11: Mammalian Reproductive Genetics Website.11Available: http://mrg.genetics.washington.edu/index.cgi?mrg_id=144985. Accessed 2011 Oct. Available: http://mrg.genetics.washington.edu/index.cgi?mrg_id=144985. Accessed 2011 Oct.
  30. 30. Johnston DS, Jelinsky SA, Zhi Y, Finger JN, Kopf GS, et al. (2007) Identification of testis-specific male contraceptive targets: insights from transcriptional profiling of the cycle of the rat seminiferous epithelium and purified testicular cells. Ann N Y Acad Sci 1120: 36–46.DS JohnstonSA JelinskyY. ZhiJN FingerGS Kopf2007Identification of testis-specific male contraceptive targets: insights from transcriptional profiling of the cycle of the rat seminiferous epithelium and purified testicular cells.Ann N Y Acad Sci11203646
  31. 31. Zhang X, Bruice TC (2007) Histone lysine methyltransferase SET7/9: formation of a water channel precedes each methyl transfer. Biochemistry 46(51): 14838–14844.X. ZhangTC Bruice2007Histone lysine methyltransferase SET7/9: formation of a water channel precedes each methyl transfer.Biochemistry46511483814844
  32. 32. Satokata I, Benson G, Maas R (1995) Sexually dimorphic sterility phenotypes in Hoxa10-deficient mice. Nature 374(6521): 460–463.I. SatokataG. BensonR. Maas1995Sexually dimorphic sterility phenotypes in Hoxa10-deficient mice.Nature3746521460463
  33. 33. Carol AP, Robert MS, Clemens JQ, Liang M, Richard LM, et al. (1999) Hoxa-10 deficient male mice exhibit abnormal development of the accessory sex organs. Developmental Dynamics 214(1): 1–12.AP CarolMS RobertJQ ClemensM. LiangLM Richard1999Hoxa-10 deficient male mice exhibit abnormal development of the accessory sex organs.Developmental Dynamics2141112
  34. 34. Davies B, Baumann C, Kirchhoff C, Ivell R, Nubbemeyer R, et al. (2004) Targeted deletion of the epididymal receptor HE6 results in fluid dysregulation and male infertility. Mol Cell Biol 24(19): 8642–8648.B. DaviesC. BaumannC. KirchhoffR. IvellR. Nubbemeyer2004Targeted deletion of the epididymal receptor HE6 results in fluid dysregulation and male infertility.Mol Cell Biol241986428648
  35. 35. Sillje HH, Takahashi K, Tanaka K, Van Houwe G, Nigg EA (1999) Mammalian homologues of the plant Tousled gene code for cell-cycle-regulated kinases with maximal activities linked to ongoing DNA replication. Embo J 18(20): 5691–5702.HH SilljeK. TakahashiK. TanakaG. Van HouweEA Nigg1999Mammalian homologues of the plant Tousled gene code for cell-cycle-regulated kinases with maximal activities linked to ongoing DNA replication.Embo J182056915702
  36. 36. Ohba Y, Mochizuki N, Matsuo K, Yamashita S, Nakaya M, et al. (2000) Rap2 as a slowly responding molecular switch in the Rap1 signalling cascade. Mol Cell Biol 20(16): 6074–6083.Y. OhbaN. MochizukiK. MatsuoS. YamashitaM. Nakaya2000Rap2 as a slowly responding molecular switch in the Rap1 signalling cascade.Mol Cell Biol201660746083
  37. 37. Aivatiadou E, Mattei E, Ceriani M, Tilia L, Berruti G (2007) Impaired fertility and spermiogenetic disorders with loss of cell adhesion in male mice expressing an interfering Rap1 mutant. Mol Biol Cell 18(4): 1530–1542.E. AivatiadouE. MatteiM. CerianiL. TiliaG. Berruti2007Impaired fertility and spermiogenetic disorders with loss of cell adhesion in male mice expressing an interfering Rap1 mutant.Mol Biol Cell18415301542
  38. 38. Allali-Hassani A, Pan PW, Dombrovski L, Najmanovich R, Tempel W, et al. (2007) Structural and chemical profiling of the human cytosolic sulfotransferases. PLoS Biol 5(5): e97.A. Allali-HassaniPW PanL. DombrovskiR. NajmanovichW. Tempel2007Structural and chemical profiling of the human cytosolic sulfotransferases.PLoS Biol55e97
  39. 39. Alnouti Y, Klaassen CD (2006) Tissue Distribution and Ontogeny of Sulfotransferase Enzymes in Mice. Toxicol Sci 93(2): 242–255.Y. AlnoutiCD Klaassen2006Tissue Distribution and Ontogeny of Sulfotransferase Enzymes in Mice.Toxicol Sci932242255
  40. 40. Minchin RF, Lewis A, Mitchell D, Kadlubar FF, McManus ME (2007) Sulfotransferase 4A1. The International Journal of Biochemistry & Cell Biology. RF MinchinA. LewisD. MitchellFF KadlubarME McManus2007Sulfotransferase 4A1.The International Journal of Biochemistry & Cell Biology
  41. 41. Prentice LM, d'Anglemont de Tassigny X, McKinney S, Ruiz de Algara T, Yap D, et al. The testosterone-dependent and independent transcriptional networks in the hypothalamus of Gpr54 and Kiss1 knockout male mice are not fully equivalent. BMC Genomics 12(209): 209.LM PrenticeX. d'Anglemont de TassignyS. McKinneyT. Ruiz de AlgaraD. YapThe testosterone-dependent and independent transcriptional networks in the hypothalamus of Gpr54 and Kiss1 knockout male mice are not fully equivalent.BMC Genomics12209209
  42. 42. Ribas RC, Taylor JE, McCorquodale C, Mauricio AC, Sousa M, et al. (2006) Effect of zona pellucida removal on DNA methylation in early mouse embryos. Biol Reprod 74(2): 307–313.RC RibasJE TaylorC. McCorquodaleAC MauricioM. Sousa2006Effect of zona pellucida removal on DNA methylation in early mouse embryos.Biol Reprod742307313
  43. 43. Bolstad BM, Irizarry RA, Astrand M, Speed TP (2003) A Comparison of Normalization Methods for High Density Oligonucleotide Array Data Based on Bias and Variance. Bioinformatics 19(2): 185–193.BM BolstadRA IrizarryM. AstrandTP Speed2003A Comparison of Normalization Methods for High Density Oligonucleotide Array Data Based on Bias and Variance.Bioinformatics192185193
  44. 44. Mood AM, Graybill FA, Boes DC (1974) Introduction to the theory of statistics. New York: McGraw-Hill. 215 p.AM MoodFA GraybillDC Boes1974Introduction to the theory of statistics.New YorkMcGraw-Hill215