Previous studies have shown that MDM2 SNP309 and p53 codon 72 have modifier effects on germline P53 mutations, but those studies relied on case-only studies with small sample sizes. The impact of MDM4 polymorphism on tumor onset in germline mutation carriers has not previously been studied.
We analyzed 213 p53 germline mutation carriers including 168(78.9%) affected with cancer and 174 who had genotypic data. We analyzed time to first cancer using Kaplan-Meier and Cox proportional hazards methods, comparing risks according to polymorphism genotypes. For MDM2 SNP309, a significant difference of 9.0 years in the average age of cancer diagnosis was observed between GG/GT and TT carriers (18.6 versus 27.6 years, P = 0.0087). The hazards ratio was 1.58 (P = 0.03) comparing risks among individuals with GG/GT to risk among TT, but this effect was only significant in females (HR = 1.60, P = 0.02). Compared to other genotypes, P53 codon 72 PP homozygotes had a 2.24 times (P = 0.03) higher rate for time to develop cancer. We observed a multiplicative joint effect of MDM2 and p53 codon72 polymorphism on risk. The MDM4 polymorphism had no significant effects.
Our results suggest that the MDM2 SNP309 G allele is associated with cancer risk in p53 germline mutation carriers and accelerates time to cancer onset with a pronounced effect in females. A multiplicative joint effect exists between the MDM2 SNP309 G allele and the p53 codon 72 G allele in the risk of cancer development. Our results further define cancer risk in carriers of germline p53 mutations.
Citation: Fang S, Krahe R, Lozano G, Han Y, Chen W, Post SM, et al. (2010) Effects of MDM2, MDM4 and TP53 Codon 72 Polymorphisms on Cancer Risk in a Cohort Study of Carriers of TP53 Germline Mutations. PLoS ONE 5(5): e10813. https://doi.org/10.1371/journal.pone.0010813
Editor: Syed A. Aziz, Health Canada, Canada
Received: April 6, 2010; Accepted: April 29, 2010; Published: May 26, 2010
Copyright: © 2010 Fang et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Funding: This study was supported by National Institutes of Health grant P01-CA 34936-19A2. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Competing interests: The authors have declared that no competing interests exist.
p53 functions as a transcription factor and tumor suppressor, responding to cellular stresses such as DNA damage and oncogene activation. It modulates the transcription of genes that regulate cell cycle arrest, apoptosis, and senescence . Aberrant function of p53 proteins is a frequent mechanism by which its inhibitory role in tumorigenesis is weakened, both in sporadic cancers, which often develop mutations of p53, and in individuals who inherit germline mutations. Mutations of p53 account for the majority of families with Li-Fraumeni syndrome (LFS), an uncommon autosomal dominant cancer syndrome , . Individuals with LFS are at an increased risk for a wide spectrum of neoplasms including breast, lung, brain, and adrenocortical cancers, and leukemias and sarcomas –. Unlike the dominant effect of germline p53 mutation on cancer risk, germline p53 polymorphisms exert more subtle effects on tumor onset or risk of cancer by modifying the function of p53. In particular, the codon 72 R/P polymorphism affects binding of p53 to p73 and has been associated with altered risk for many different cancers –.
MDM2 SNP309 (rs2279744; T/G) is located 309 base pairs downstream from intron 1 in the promoter of MDM2. The single nucleotide polymorphism (SNP) 309 T>G change has been found to enhance the affinity of the transcriptional activator Sp1, leading to increased levels of MDM2, and thereby weakening the p53 pathway of tumor suppression . In germline p53 mutation carriers, SNP309 was reported to accelerate tumor onset and to be associated with the development of multiple primary tumors throughout the lifetime –}. The presence of the G allele was found to be highly related to earlier cancer diagnosis in LFS or Li-Fraumeni−like syndrome. The numbers of affected carriers of a germline p53 mutation in three earlier published studies were small and analyses were restricted to include only individuals who had already developed cancer. Therefore, prior studies have limited generalizability for individuals at risk for cancer development due to inherited p53 mutations who may not yet have developed cancer.
MDM4 (MDMX) is a negative regulator of p53 and cooperates with MDM2 to inhibit p53 activity in cellular response to DNA damage. The human MDM4 gene has been mapped to chromosome 1q32, a target for amplification in malignant gliomas . While MDM4 inhibits p53 activity in early embryogenesis in animal models, MDM4 has a weak effect on p53 activity in many cell types . Atwal et al(2009) reported that genetic variants in MDM4 led to an increased risk of early onset of human breast and ovarian cancers in unrelated individuals . In another independent case-control study, a polymorphic variant in human MDM4 was only found to be associated with an accelerated age of onset of estrogen receptor negative breast cancer . The impact of MDM4 on age of tumor onset in germline mutation carriers has not previously been investigated.
In this study, we investigated whether MDM2 SNP309, MDM4, and p53 codon 72 polymorphisms have any effect on risk for any type of cancer in carriers of a p53 germline mutation. This is a long-term systematic follow-up study in which germline p53 mutations and genetic polymorphisms were identified without respect to the cancer status in the family. This follow-up study with a larger sample size allowed us to characterize the cancer risks among carriers of germline p53 mutations. We estimated hazard ratios by Kaplan-Meier methods and Cox regression to adjust for covariates and familial correlations by performing the robust sandwich estimate of Lin and Wei .
Materials and Methods
The protocol and consent form is annually reviewed by the IRB at the University of Texas MD Anderson Cancer Center. No patient names are revealed in any reports or publications from this study. The present study population consisted of several cohorts of families that were identified through probands with early onset sarcoma or multiple cancers and that were found to carry p53 germline mutations. One cohort comprises 107 kindreds identified through probands with soft-tissue sarcoma (STS) diagnosed before age 16 years during the years from 1944 to 1975 at The University of Texas M. D. Anderson Cancer Center (MDACC) who survived at least 3 years after diagnosis and had samples available for testing , , . We identified 63 individuals in seven STS kindreds as carriers of a p53 germline mutation. Another cohort included 71 families identified through probands who were diagnosed with osteosarcoma (OST) before age 20 years during the period from 1944 to 1982 at MDACC who had samples available for testing. We identified11 individuals in six OST kindreds who were carriers of a p53 germline mutation. We also identified 2 carriers from two kindreds of probands with multiple primary malignant tumors and p53 germline mutations. The remaining 137 carriers were identified from 59 LFS kindreds. Subjects were treated as a carrier of a p53 germline mutation if they were shown by genetic testing to carry the mutation or if both a parent and offspring were demonstrated to carry the mutation, and thus positive mutation status could be inferred. We analyzed 213 carriers of a germline p53 mutation in this study. Of the 213 individuals who could be inferred to have a p53 mutation, samples were available for 132 individuals, but MDM4 genotypes were missing for two of these individuals. A detailed description of the p53 sequencing and genotyping procedures is provided in the supplemental materials(Text S1; Figure S1, Figure S2 and Figure S3; Table S1 and Table S2).
We first tested for differences in age at cancer diagnosis among the different genotype groups using a nonparametric Kruskal-Wallis test. Among the carriers of a germline p53 mutation, we first performed a log-rank test for risk differences based on sex and mutation type, using the Kaplan-Meier product-limit method. Missing genotype data (n = 43, 44, and 42 for MDM2, MDM4, and p53 codon 72, respectively) were imputed using Linkage software , and estimating population allele frequencies within each ethnicity. For this analysis, we estimated the likelihood of each genotype for individuals who had a p53 mutation and at least one relative who had been genotyped for a MDM2, MDM4, or p53 codon 72 polymorphism. The probability of a particular genotype was derived as the ratio of the likelihood for the family given that the mutation carrier had each particular genotype divided by the likelihood for the family. Genetic effects of MDM2, MDM4, and p53 codon 72 polymorphisms were estimated by using a weighted Cox proportional hazard model, unadjusted or adjusted for sex, race, and birth year and weighted by the probability of each genotype (for the inferred data). We took into account the familial correlation in the model by calculating the robust variance. The time to onset was from birth to first cancer diagnosis, for those who had cancer, and the censoring time was from birth to last contact (fixed to December 31, 2001), death, or study termination, for those who had no cancer. All statistical analyses were conducted by using SAS 9.1 (SAS Institute, Cary, NC). A P-value<0.05 was considered statistically significant.
Of the 213 carriers with a p53 germline mutation analyzed, 168 (78.9%) were affected with cancer, and the mean period from birth to cancer diagnosis or censoring was 27.9 years (SD = 18.2). Figure 1 illustrates the distribution of cancer occurrences by age and sex. Female mutation carriers were at higher risk than male carriers (log-rank test, P = 0.0057); the mean age of cancer diagnosis was 24 years in females and 26 years in males. No risk difference was detected between the two types of germline mutations, missense and truncating (log-rank test, P = 0.09) (Figure 2). Stratification analysis showed that the codon 72 polymorphisms in cis had no effect on age of tumor onset in carriers of dysfunctional missense mutations (P = 0.20) or truncating mutations (P = 0.78), and similarly in trans there was no significant effect when stratified by p53 mutation type. Because there were missing genotypes for some carriers and a comparatively small sample of individual genotypes, hazard ratios (Table S3) estimated via the proportional Cox model restricted to only the raw genotype data have limited power. Table S4 shows that allelic distribution varied significantly among the different ethnicities for each polymorphism. The best genetic model for each SNP was determined by choosing the model with the lowest Akaike information criterion (AIC) value from among the general, dominant, recessive, and additive models (Table S5).
Observations included 101 males and 112 females (log-rank test P = 0.0057).
Among these 213 carriers(one missing type of mutation), 130 carried a missense mutation and 82 a truncation mutation (deletion 1, nonsense 50, frame-shift 16, splice 15). Log-rank test P = 0.0900.
Comparing the age at diagnosis among those affected with cancer (table 1), a significant average difference of 9.0 years was observed for the carriers of a G allele for the MDM2 SNP309 polymorphism compared to TT carriers (18.6 versus 27.6 years, P = 0.0087). When analyzing time to onset including affected and unaffected individuals who were genotyped we did not observe a significant difference among genotypes for the MDM2 SNP309 (P = 0.5557) (Figure S4). Stratification analysis showed that G allele carriers had a worse survival than TT homozygotes among females(Log-Rank test P = 0.1483, Wilcoxon test P = 0.0950)(Figure S5), but those two genotype groups among males had the same survival distributions over time (P>0.1 for both Log-Rank test and Wilcoxon test)(Figure S6). When including the imputed data, a trend towards significance was noted for the univariable analysis of the MDM2 G allele (P = 0.0764 unadjusted and P = 0.1067 adjusted analysis) (Table 2), but carriers of a G allele had a 1.58 fold increased risk for cancer after adjusting for sex, race, birth year, and effects from other polymorphisms in multivariable analysis (P = 0.0313) (Table 3). Including an interaction term between MDM2 SNP309 polymorphism and sex revealed that the G allele was a risk allele among females (P = 0.02) but not among males (P = 0.1936). To limit possible effects of referral bias, further multivariable analysis was performed among carriers of a p53 germline mutation after excluding the probands and yielded similar results. Carriers of the MDM2 G allele had a high risk among all relatives (P = 0.0117) or female relatives (P = 0.0089), but no significant effect was noted among male relatives (P = 0.1315) (Table S6).
For MDM4, we identified no significant difference in the average ages of first cancer diagnosis between AA, AG, and GG groups (P = 0.9680) (Table 1). The log-rank test result shows no difference in risk of cancer among these three genotypes (P = 0.6646) or between the AG/GG and AA groups (P = 0.3770) (Figure S7). The MDM4 polymorphism did not have a significant effect on risk of developing cancer because it was not significant in unadjusted (P = 0.1054) or adjusted univariable analysis (P = 0.1584) (Table 2) or multivariable analysis (P = 0.0712) of raw plus inferred genotype data (Table 3). No significant difference was found for MDM4 polymorphism when probands were excluded from the analysis (P = 0.0752) (Table S6). While no significant effects were observed in this study, studies in a larger collection of families are needed to resolve whether MDM4 has any effect on risk for cancer among carriers of a p53 mutation.
For the p53 codon 72 polymorphism, only seven mutation carriers had the PP genotype. A difference of 4.9 years in mean age at cancer diagnosis was detected between PP and RP/RR groups, but the difference was not significant in univariate analyses (18.5 years versus 23.4, P = 0.5828) (Table 1). There was no significant difference in survival curves among PP, PR, and RR groups (P = 0.0955) when the joint distributions of time to diagnosis among all genotypes were contrasted, but the time to diagnosis differed significantly between PP and either PR or RR genotypes (P = 0.0447) according to the log-rank test on genotyped data (Figure S8). In the full sample, including inferred data, the codon 72 P allele was a risk allele for cancer in the unadjusted univariable analysis (P = 0.0052), adjusted univariable analysis (P = 0.0327) (Table 2), and multivariable analysis after adjusting for covariates and other SNPs (HR = 2.24, P = 0.0287) (Table 3). Further analysis showed that the PP genotype had a significant recessive effect on cancer development among males (P<0.0001), but not among females (P = 0.4864). The hazard ratios increased and P-values became smaller if multivariable analysis excluded probands (P<0.0001), and the P-value was significant among both males (P<0.0001) and females (P<0.0001) (Table S6).
Because both MDM2 SNP309 and p53 codon 72 polymorphism can attenuate the inhibitory role of p53 in tumorigenesis , we examined the joint effect of MDM2 and p53 codon72 polymorphism (Table 4). Compared with the reference group carrying no risk genotype at either locus (i.e., MDM2 TT and p53 codon 72 PR/RR), those with a risk genotype on one of the loci, MDM2 (MDM2 GG/GT and p53 codon 72 PR/RR) were 1.54 times more likely to have cancer (P = 0.0319), and the highest hazard ratio of 3.25 was observed for those carriers with risk genotypes at both loci (P = 0.0367); this hazard ratio is close to the product of hazard ratios for the main effects of risk genotype at each locus (1.54×2.36 = 3.63), suggesting that the two SNPs together have a multiplicative joint effect.
It is noteworthy that carrier birth year was a significant covariate in both univariable (Table 2) and multivariable analysis (Table 3). In carriers of a p53 germline mutation, each subsequent date of birth increased the cancer risk by 3% (P<0.0001). This trend was observed for both men and women (Table 3). The findings suggest genetic anticipation in later birth cohorts or effects from unmeasured environmental factors that have an increasing effect on risk over time.
In this study, we evaluated whether specific genetic polymorphisms have any impact on risk of cancer in carriers of a p53 germline mutation. Among p53 carriers, cancer risk was significantly higher in females than in males, but no difference in cancer risk was found between missense and truncating mutation groups. Our results demonstrate that MDM2 SNP309 and p53 codon 72 polymorphisms have strong genetic effects in carriers of a p53 germline mutation. Cancer diagnosed in affected carriers with MDM2 GG/GT was on average 9 years earlier than that in affected carriers carrying the TT genotype. Although MDM2 SNP309 was not a significant cancer risk factor via the log-rank test or in univariable analysis, it was linked to a 1.58 times greater likelihood of developing cancer than TT homozygosity after adjusting for other confounders. A significant SNP309 effect was observed in women but not in men. Patients with p53 72P developed cancer 5 years earlier than individuals with RP/RR genotypes, but the difference was not significant. In Cox regression analysis, the p53 codon 72 PP genotype carried a significantly higher risk of developing cancers. Our results indicate that a multiplicative joint effect exists between the MDM2 and the p53 codon 72 polymorphism. However, no significant effects were observed between MDM4 and cancer risk in germline mutation carriers.
Bond et al. (2004) analyzed 88 affected mutation carriers and found that the median age of tumor onset for those who carried GG/GT (18 years) was 9.0 years earlier than that for those carrying TT (27 years) (P = 0.031) . The present study is a continuing follow-up cohort including some cancer cases studied by Bond. However, our study is more accurate because it has more samples and includes all p53 carriers, not just those who had cancer. Bougeard et al. (2006) showed that, among 61 French carriers of a germline p53 mutation (41 affected with cancer), the mean age of tumor onset in those with MDM2 SNP309 GG/GT (19.6 years) was significantly younger than in those with MDM2 TT (29.9 years) (P<0.05) . Marcel et al. (2009) demonstrated that, in a group of 32 cancer-affected Brazilian patients with LFS or Li-Fraumeni−like syndrome and a germline p53 mutation, the presence of a G allele was associated with a 12.5-year earlier diagnosis (GG/GT 26.3 years versus TT 38.8; P = 0.06) . So far all previous studies consistently show that MDM2 SNP309 can accelerate tumor formation in carriers of a germline p53 mutation. In the present study, comparison of mean age of tumor diagnosis between affected carriers with different MDM2 SNP309 genotypes revealed a significant difference, but the genotype did not significantly affect the hazard for cancer development among all carriers. When we adjusted for confounders, the MDM2 SNP309 effect became significant overall and we observed a 58% higher cancer risk in the G allele carriers compared with TT homozygotes. We also observed a higher risk from the MDM2 SNP309 genotypes in females, compared to males. The more pronounced effect in females that we observed may relate to biological regulation of MDM2 by estrogen. MDM2 SNP309 is located in a region of the MDM2 promoter regulated by hormonal signaling pathways. The G allele was demonstrated to enhance the affinity of a co-transcriptional activator of multiple hormone receptors, for example ER or Sp1. Bond et al. (2006) showed that this polymorphism accelerated tumor formation in a gender-specific fashion, and depended upon estrogen signaling . This finding suggested a genotype-dependent role for clinical manipulation of hormone level in cancer prevention and treatment. Interestingly, Bond et al. had a similar finding in 162 patients with diffuse large B-cell lymphoma, where the G allele contributed to earlier tumor onset only among females, but not among males .
Bougeard et al. showed that the presence of the p53 72 R allele accelerated tumor onset by 12.6 years in carriers of a germline p53 mutation (P<0.05) . Marcel et al. reported that the R allele reduced age at cancer diagnosis by almost 8 years in individuals with LFS or Li-Fraumeni−like syndrome, although the difference was not significant (P = 0.22) . Our findings that the PP genotype increased risk after adjusting for cohort effects were in conflict with those of the previous two studies, but were consistent with the report of Martin et al. that the P72 allele was a risk factor for breast cancer in 84 carriers with BRCA1 mutation .. Dumont et al. reported that the p53 72R variant was 5- to 10-times more likely to induce programmed cell death than the 72P variant, and the authors suggested that the low apoptotic potential of the 72P variant might account for increased predisposition to cancer development in carriers of the 72P variant .
In conclusion, our study confirms that the MDM2 SNP309 G allele is associated with cancer risk in carriers of a p53 germline mutation and that it accelerates tumor formation with a pronounced effect in females. Our results also suggest that p53 codon 72 PP homozygosity is a risk factor for cancer. We found a joint multiplicative effect of MDM2 SNP309 G allele and p53 codon 72 PP homozygosity. Our results provide insights that SNPs further modify the risk for cancer development in individuals with p53 mutations. In addition, given the high prevalence of p53 mutations in sporadic cancers, our findings may generalize to a broader set of cancers.
Sequencing representation of a wild-type and a mutation and/or polymorphism.
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Representative programs of all three possible genotypes for SNPs TP53 P72R.
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Representative programs of all three possible genotypes for MDM2 SNP309.
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Proportion of subjects who were cancer free by MDM2 SNP309 polymorphism at different ages. Log-rank test among GG, GT, and TT, P = 0.5557, and between GG+GT and TT, P = 0.3654.
(0.60 MB TIF)
Proportion of female subjects who were cancer free by MDM2 SNP309 polymorphism at different ages. Log-rank test among GG,GT and TT, P = 0.1864, Wilcoxon test P = 0.2414; Log-rank test between GG+GT and TT, P = 0.1483, Wilcoxon test P = 0.0950.
(0.60 MB TIF)
Proportion of male subjects who were cancer free by MDM2 SNP309 polymorphism at different ages. Log-rank test among GG,GT and TT, P = 0.9906, Wilcoxon test P = 0.5885; Log-rank test between GG+GT and TT, P = 0.9881, Wilcoxon test P = 0.9001.
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Proportion of subjects who were cancer free by MDM4 polymorphism at different ages. Log-rank test among AA, AG, and GG, P = 0.6646, and between AA and AG+GG, P = 0.3770.
(0.58 MB TIF)
Proportion of subjects who were cancer free by p53 codon 72 polymorphism at different ages. Log-rank test among PP, PR, and RR, P = 0.0955, and between PP and PR+RR, P = 0.0447.
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Detection of germline p53 mutations.
(0.06 MB DOC)
Primer sequences for genotyping assays.
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Univarible and multivariable analyses of MDM2, MDM4, and p53 codon 72 polymorphisms on age of tumor diagnosis using raw genotype data from carriers of a p53 germline mutation.
(0.04 MB DOC)
Distribution of allele frequencies by ethnicity.
(0.03 MB DOC)
Genetic model selection using AIC in univariable analysis of MDM2, MDM4, and p53 codon 72 polymorphisms on age of tumor diagnosis using raw plus imputed genotype data among carriers of a p53 germline mutation.
(0.05 MB DOC)
We thank Phillip J Lum for data management and Jianzhong Ma for advice in linkage analysis.
Conceived and designed the experiments: SF RK GL LLB LCS CIA. Performed the experiments: RK GL SMP BZ CDW LLB LCS. Analyzed the data: SF RK GL YH WC LCS CIA. Contributed reagents/materials/analysis tools: SF RK GL SMP BZ CDW LLB LCS CIA. Wrote the paper: SF RK GL YH WC SMP BZ CDW LLB LCS CIA. Final approval of the version to be published: CIA SF RK GL YH WC SMP BZ CDW LLB LCS. Administrative support: LCS.
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