Thyroid hormone (TH) is critical to normal brain development, but the mechanisms operating in this process are poorly understood. We used chromatin immunoprecipitation to enrich regions of DNA bound to thyroid receptor beta (TRβ) of mouse cerebellum sampled on post natal day 15. Enriched target was hybridized to promoter microarrays (ChIP-on-chip) spanning −8 kb to +2 kb of the transcription start site (TSS) of 5000 genes. We identified 91 genes with TR binding sites. Roughly half of the sites were located in introns, while 30% were located within 1 kb upstream (5′) of the TSS. Of these genes, 83 with known function included genes involved in apoptosis, neurodevelopment, metabolism and signal transduction. Two genes, MBP and CD44, are known to contain TREs, providing validation of the system. This is the first report of TR binding for 81 of these genes. ChIP-on-chip results were confirmed for 10 of the 13 binding fragments using ChIP-PCR. The expression of 4 novel TH target genes was found to be correlated with TH levels in hyper/hypothyroid animals providing further support for TR binding. A TRβ binding site upstream of the coding region of myelin associated glycoprotein was demonstrated to be TH-responsive using a luciferase expression system. Motif searches did not identify any classic binding elements, indicating that not all TR binding sites conform to variations of the classic form. These findings provide mechanistic insight into impaired neurodevelopment resulting from TH deficiency and a rich bioinformatics resource for developing a better understanding of TR binding.
Citation: Dong H, Yauk CL, Rowan-Carroll A, You S-H, Zoeller RT, Lambert I, et al. (2009) Identification of Thyroid Hormone Receptor Binding Sites and Target Genes Using ChIP-on-Chip in Developing Mouse Cerebellum. PLoS ONE 4(2): e4610. https://doi.org/10.1371/journal.pone.0004610
Editor: Patrick Callaerts, Katholieke Universiteit Leuven, Belgium
Received: October 7, 2008; Accepted: January 8, 2009; Published: February 25, 2009
Copyright: © 2009 Dong et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Funding: This work was founded by the Health Canada Genomics R&D fund. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Competing interests: The authors have declared that no competing interests exist.
Thyroid hormone (TH) is essential for brain development in humans and animals . The neonatal period of human development is particularly well-studied in part because of the disorder known as congenital hypothyroidism (CH) . CH occurs at a rate of approximately 1 in 3,500 live births , though this may be increasing . CH infants do not present early specific clinical features; therefore, only 10% of CH infants were diagnosed within the first month, 35% within 3 months, 70% within the first year, and 100% only after age 3 ,  before neonatal screening for TH was implemented. The intellectual deficits resulting from this delayed diagnosis and treatment were profound. One meta-analysis found that the mean full-scale intelligence quotient (IQ) of 651 CH infants was 76 . Moreover, the percentage of CH infants with an IQ above 85 was 78% when the diagnosis was made within 3 months of birth, 19% when it was made between 3 and 6 months, and 0% when diagnosed after 7 months of age , . Thus, TH plays a major role in brain development and thyroid dysfunction is a major cause of mental retardation. This is also particularly important because a large number of environmental contaminants may impact thyroid function and/or thyroid hormone action –.
The molecular mechanisms by which TH impacts brain development are becoming better understood. In general, it is postulated that many of the effects of TH are mediated by their receptors (TRs) – nuclear proteins that directly regulate gene expression . Likewise, the neurodevelopmental events affected by TH are also becoming better understood. For example, TH appears to regulate fate specification of early cortical neurons , migration of cortical  and cerebellar  neurons, synaptogenesis,  and apoptosis , . However, the specific genes that are directly regulated by TH through the TRs, and which account for TH effects on specific developmental events, are poorly characterized. Moreover, we know little about the DNA regulatory elements through which TRs exert their actions on gene regulation .
Identification of direct targets of TH in the developing brain has proven difficult, but perhaps for predictable reasons. Specifically, we ,  and others ,  have attempted to identify TH-responsive genes in the developing brain using a variety of “functional genomics” approaches. All of these reports employed an RNA-based approach. However, a significant theoretical weakness in this approach is that the cellular phenotype of the hypothyroid brain in development is significantly different from that of the euthyroid brain. For example, the hypothyroid brain has considerably more astrocytes and fewer oligodendrocytes in areas of white matter , . Therefore, it is likely that a large number of expressed sequences that differ in abundance when thyroid hormone levels are manipulated during development reflect differences in cellular phenotype at the time of sacrifice.
Considering the importance of TH to brain development and the challenge of identifying direct gene targets of TH action, we reasoned that chromatin immunoprecipitation combined with DNA microarray analysis (ChIP-on-chip) would be an effective approach to identify direct gene targets of TH. Moreover, we chose to focus on the neonatal (postnatal day (PND) 15) cerebellum because it is a well studied target of TH action in development . Circulating TH levels reach a peak at PND 15 , , the critical time point marked by the onset of active myelination and synapses refinement in Purkinje cells , , . We employed custom DNA microarrays that contained probes covering 10 kb of genomic sequences flanking the transcription start site (TSS) of 5000 genes selected from our pervious microarray studies and related literatures. The use of microarrays containing selected genes tends to limit the potential for false positives that would invariably occur with arrays containing the entire genome and increases the number of probes per gene, thus improving sensitivity and resolution. This study represents the first large-scale approach to identify direct gene targets of TH action in the developing brain.
Assessing specificity of polyclonal antibody and ChIP protocol
The TRβ-1 antibody used for ChIP in the current study showed high specificity as indicated by Western blot analysis using GH3 cell extracts (Figure 1 A). A single band of 52 kDa was detected as expected. Immunoprecipitated (IP) DNA and total input (TI) DNA were amplified and evaluated by confirming the enrichment of the well-characterized TRE in the promoter of myelin basic protein (MBP)  by PCR before samples were hybridized to DNA microarrays. Figure 1 B shows clear enrichment of MBP-TRE (relative to β-actin) in amplified ChIP DNA of all 5 cerebella of male mice at PND 15.
A. Characterization of TRβ antibody with the GH3 cell line. A single 52 kDa band was detected with Western blot. B. Characterization of the enrichment of MBP-TRE in all cerebellum samples. Enrichment of fragments from the promoter region of β-actin and MBP was examined with PCR using IP and TI DNA amplified with WGA kit. One representative sample in the bottom shows the enrichment in non-amplified DNA. The right panel shows the enrichment ratio of MBP to β-actin calculated using quantified band intensities.
Identification of TRβ binding sites
Five cerebella of male mice, shown in Figure 1 B, were analysed using the Agilent custom promoter arrays that contained probes covering 10 kb of genomic sequences flanking the TSS of 5000 selected genes. Complete microarray data are available at MIAMExpress (http://www.ebi.ac.uk/miamexpress/cgi-bin/mx.cgi; accession number E-MEXP-1801). The genes identified with the Chip Analytics software as enriched in at least 3 samples are listed in Table 1, along with the genomic location of the binding sites, enrichment log ratio, and general biological function. As shown in Figure 2, approximately half of the binding sites were located in introns, while about 30% of them were located within 1 kb upstream (5′) of the TSS of their associated gene. Figure 3 shows examples of ChIP enrichment data for 4 representative genes. The plots show enrichment ratios along with chromosomal positions (NCBI build 34) in the mouse genome. Arrows indicate both the TSS and direction of transcription.
The mid point of each probe was used to calculate the distance to the closest gene.
The plots show enrichment ratios for all probes within a genomic region (IP versus TI DNA). Chromosomal positions are from NCBI build 34 of the mouse genome. The start and direction of transcription are noted by arrows. Black bars on the X axis indicate the fragments whose enrichment was confirmed with PCR.
Validation of the binding sites with ChIP-PCR
In order to verify the robustness of binding sites found with ChIP-on-chip, we randomly selected and analyzed 13 binding sites for confirmation of their enrichment using PCR. β-actin was used as a negative control, and MBP-TRE was used as a positive control. Amplified TRβ-IP or IgG-IP DNAs along with TI-DNAs from 2 cerebella were pooled, with equal quantities of DNA from each sample, and used as template for PCR. Ten of the 13 genes were confirmed to be enriched with TRβ binding as shown in Figure 4. Of the 10 confirmed genes, CD44 and VLDLR have previously been reported as TH responsive genes , . In addition to the well-known TRE sequence in the promoter region of MBP, we also identified a second enrichment site in the first intron of Golli-MBP . As 3 (Fign, CD81and Pax3) of 13 binding sites tested were not confirmed by PCR, these data suggest the analysis has false discovery rate of approximately 23% (3/13).
Expression of novel TH target genes in TH modulated animal models
Among the 10 ChIP-PCR validated genes, SMS (Spermine Synthase), LMO2 (Lim domain only 2) and GTF3c1 (General Transcript Factor 3c1) were selected for further assessment of TH regulation using in vivo models; this selection was based on the paucity of literature regarding TH control of their expression. In addition, myelin associated glycoprotein (MAG) was also selected for further analysis as it has been shown to be altered by TH status but no TRE has been described for this gene . The expression of MBP was, again, used as a positive control for TH-induced gene regulation in the various animal models. Serum T4 levels in 6-propyl thiouracil (PTU) -or mercapto-methylimidazole (MMI)/perchlorate-treated pups were significantly reduced while TH injected pups were shown to have significantly elevated serum TH levels compared with control pups. The serum T4 levels in TH replacement pups rendered hypothyroid by MMI/perchlorate were approximately equivalent to control levels (Table S1). The expression of MBP varied with TH level (Figure 5 A and B). Similar to MBP, the expression of SMS, MAG and LMO2 were significantly changed corresponding with the TH levels. A significant change in expression of GTF3c1 was not found in TH injected pups or those rendered hypothyroid with MMI/perchlorate treatment, but expression was elevated almost 2 fold (p<0.05) in cerebella of hypothyroid/replacement group and reduced to almost 0.75 fold (p<0.05) in PTU-treated pups. The discrepancy in gene expression in these two models may be explained by the different mechanism through which these compounds act to induce hypothyroidism. PTU inhibits TH synthesis by inhibition of thyroperoxidase (TPO) and decreasing the activity of deiodinases, while MMI/perchlorate acts by blocking iodine transportation and enhancing hepatic catabolism .
A. MMI/perchlorate induced hypothyroid, hyperthyroid or hypothyroid/replacement animal models. B. PTU induced hypothyroid animal models. RT-PCR was performed with RNA extracted from cerebellum on PND15 (n = 5). * Significantly different from control (p<0.05).
Characterization of TRβ binding region in promoter of MAG
As described above, the TRβ binding site in the promoter region of MAG was confirmed with both ChIP-on-Chip and ChIP-PCR. There were no obvious candidate TREs, based on the degenerate consensus sequence, across this binding region. To further characterize the TRE sequence in this region, we constructed a series of truncated MAG-promoter reporter plasmids (shown in Figure 6 A). The reporter system was validated by examining the effect of T3 treatment on transcriptional activity of the Growth Hormone (GH) TRE sequence cloned into the reporter vector. T3 induced GH transcriptional activity by 1.6-fold (Figure 6 B). T3 also increased transcriptional activity of a MAG-promoter reporter plasmid 3 containing a fragment from −390 bp to the TSS, by 1.4-fold. Deletion of the 110 bp fragment from −390 to −280 bp resulted in a decrease in the basal transcription level; transcription activity was induced by only 1.2 fold with T3 treatment (Figure 6 C). These results indicate that the binding site spanning a region of 110 bp (−390 to −280) may include the potential TREs.
A. The location of the 3 truncated fragments used to build the reporter constructs. The PCR-confirmed ChIP enriched fragment is indicated by the black bar. The TSS and direction is indicated with an arrow. B and C. Transcriptional activity of GH reporter construct or MAG promoter reporter constructs induced by TH. The reporter constructs and empty vector were co-transfected into GH3 cells with pRL-TK (as a transfection efficiency control). T3 (10−8 M) was added after 24 hrs. Firefly luciferase expression was normalized to renilla luciferase from the pRL-TK plasmid. Values are mean±S.E. (n = 3). *indicates p<0.05.
This is the first report of a relatively large-scale approach to identify direct TH gene targets in the developing mouse brain. Using ChIP-on-chip approach, we identified TRβ binding fragments corresponding to 91 genes in the cerebellum of male mice at PND 15. Approximately half of these sites are located within introns, and 30% are located within 1 kb upstream of the TSS. Several of these genes are known direct targets of TH action (CD44, MBP and VLDLR), indicating that our strategy was capable of identifying known targets. In addition to confirming the classical TRE in the MBP promoter , we identified a novel TR binding site well upstream of the classic MBP TSS, located within the first intron of an alternate transcript of this gene known as Golli MBP . Golli-MBP is expressed not only in myelin-forming cells, but also in neurons in the CNS and peripheral nervous system, and in macrophage and T-cells of the immune system , . Direct TR regulation of Golli-MBP indicates the important role of TH in myelination and migration of oligodendrocytes, in addition to its role in the immune system. These findings provide a first glimpse at the specific gene targets through which TH controls cerebellar histogenesis in the mouse.
We found that a large proportion (47%) of the TR binding sites are located within introns, suggesting that transcriptional control by TR could be exerted at sites downstream of the TSS. It has long been recognized that active TREs can reside within introns of TH responsive genes. The TH-regulated expression of GH is mediated through both a TRE in the regulatory region upstream of the TSS  and a site with higher affinity for TR within the third intron of the gene . Similarly, the expression of hepatic carnitine palmitoyltransferase-I alpha, an enzyme involved in fatty acid metabolism, is regulated by TR action at a TRE located in the first intron . Intronic locations of transcriptional regulatory sites appear to be common for a variety of nuclear receptors including the androgen receptor , glucocorticoid receptor , vitamin D3  and PPAR gamma . Likewise, between 38 and 47% of estrogen receptor binding sites are located within introns , .
TR binding sites identified with ChIP-on-chip were analyzed independently with ChIP-PCR for 13 randomly selected genes. Ten of these sites were confirmed as enriched by TRβ ChIP, suggesting a false positive rate of approximately 23% for our approach. ChIP-on-chip is a novel method to study chromatin – DNA interactions over the entire genome. Our results are not unusual given that previous data from ChIP-on-chip studies have reported false positive rates as high as 30% . There are a number of confounding variables, including purity of ChIP DNA, amplification methods and resolution of probes for each gene. It is also probable that the list of enriched genes identified by ChIP-on-chip is highly dependent on the algorithm applied (normalization, statistics to identify enriched regions, criteria for calling a site significant, etc.) which may influence the rate of false positives and false negatives.
Identified as one of novel targets of TH regulation, SMS is essential for transforming spermidine to spermine, which are ubiquitous cellular components that play critical roles in cellular physiology . Polyamines are required for numerous cellular processes including transcription, translation and modulation of ion channel activities,  Deficiency of SMS in mice is associated with deafness, inner ear abnormalities, and hyperactivity, while congenital deficiency in humans is associated with mental retardation and cerebellar abnormalities . All of these phenotypes are common manifestations of developmental hypothyroidism . In the current study we identified TR binding sites in the promoter region of SMS. Moreover, TH positively regulated the expression of SMS in both mouse models of TH disruption. Microarray analyses of cerebellum transcript levels in mice or rats treated with a low concentration of PTU showed that SMS expression was reduced in hypothyroid mice of both sexes, but only in male hypothyroid rats (in preparation). Therefore, down-regulation of SMS, causing decreased production of polyamines, may be one mechanism that leads to neurodevelopmental aberrations in the offspring of hypothyroid dams. More work is required to investigate this pathway and its response to TH in the brain.
Among the other novel TH target genes selected for further analysis, LMO2 is a member of a family of genes encoding Lim-only proteins, which are speculated to affect the development of the mouse CNS because of their high expression in this region –. Using both ChIP-on-chip and ChIP-PCR, we found that TR bound to a LMO2 intron, and our results suggest that LMO2 expression is regulated by TH in our animal models. GTF3c1 is a transcription factor required for the regulation of genes transcribed by RNA polymerase III . Our results indicate a TR binding site in the first intron of this gene and that the expression of GTF3c1 is upregulated in the cerebellum of hypothyroid animals with TH replacement (Figure 5). However, the reduced expression was found in hypothyroid animals induced by PTU, but not in animals induced by MMI/perchlorate. This suggests that factors other than TH may prevent the reduction in GTF3c1 expression. A recent study examining hepatic genome-wide expression in wild type and TR knock-out mice treated with TH or goitrogen found that, like GTF3c1, roughly half of all genes that showed positive regulation by TH excess, exhibited no response to TH deficiency . Although that study did not attempt to determine the presence of genomic TR binding sites that could potentially regulate the expression of these genes, the results suggest that the pattern of response of GTF3c1 expression in the cerebella of TH-manipulated animals may not be uncommon for TH regulated genes.
MAG is a quantitatively minor component of isolated myelin that functions in glia-axon interactions . The abnormal expression of MAG in hypo/hyperthyroidism has previously been reported in several studies –, but there is little information on how its expression is directly affected by TH. The current study shows that TRβ binds in the region between −280 to −390 bp, which significantly influences the transcription activity. A search using an internet based tool to identify TREs based on classical descriptions (TESS: Transcription Element Search System  : located at http://www.cbil.upenn.edu/cgi-bin/tess/tess; ) failed to identify any of the classic TRE forms (DR4, DR6, palindromic form or inverted palindrome), suggesting that the sequence of the binding site is novel. We found a half TRE (AGGTCA) in this region, but alteration of this sequence to AGATCA by site-directed mutagenesis had no effect on the transcriptional activity in vitro (data not shown). This suggests that TRβ may not bind to the half TRE and that this specific sequence has no functional significance. The expression of MAG in our animal models is correlated with TH level suggesting that the presence of a TR binding site in the regulatory region of the gene is genuine. Further analyses will be needed to characterize the nature and sequence of the TR regulatory element in this gene, but current findings indicate that not all TREs will conform to variations of the classic forms.
In conclusion, we have identified TR binding sites associated with 91 genes in the developing mouse cerebellum. Binding sites may be located in different genomic contexts (both upstream and downstream of genes, and in introns) and may not adhere to conventional sequence models. As TR binding suggests the presence of consensus thyroid regulatory elements and, hence, direct TH regulation of these genes, the current study provides support for the role of products of these genes in thyroid hormone-directed neurodevelopment.
Materials and Methods
Animals and tissues collection
All animal handling procedures adhered to the Canadian Council on Animal Care guidelines and were approved by the Health Canada Animal Care Committee prior to the initiation of the study. Nulliparous, sexually mature C57BL/6 mice were purchased from Charles River (St. Constant, QC, Canada) and were housed individually (males) or in pairs (females) in hanging polycarbonate cages under a 12∶12 hrs light-dark cycle at 23°C with food (Purina rodent chow 5010; Ralston-Purina, MO) and water available ad libitum. After 2 weeks acclimation to the facility, breeding was initiated by transferring 2 females to each male cage. Females were examined within 1 hr of light cycle for the presence of a vaginal plug as an indication of pregnancy. Plug positive females were weighed and transferred to separate cages, where they were housed singly and weighed 10 days post coitus to confirm pregnancy. Dams were allowed to litter naturally (day of birth = PND 1) and numbers of pups per litter were not adjusted. On PND 15, pups were sacrificed by decapitation and cerebellum was removed, immediately frozen in liquid nitrogen and stored at −80°C.
PTU hypothyroid model.
Pregnant C57BL/6 mice were supplied ad libitum with water containing diet cherry Kool-aid (Kraft Inc., ON, Canada) with or without 0.1% PTU (Sigma-Aldrich, Oakville, ON, Canada) from gestation day 13 to PND 15. On PND 15, 5 male pups from different litters were sacrificed by decapitation and cerebellum was collected and stored at −80°C. At least one littermate of the same sex was exsanguinated under isofluorane anaesthesia and serum retained for T4 analysis.
MMI hypo/hyperthyroid models.
Twenty eight pregnant C57BL/6 mice were divided randomly into 4 groups: control, hypothyroid, hypothyroid/replacement and hyperthyroid. On PND 5 all dams were supplied with drinking water containing sucrose starting at 1% and increasing to 2% on PND 9. Dams and their litters in the hypothyroid and hypothyroid/replacement groups were rendered hypothyroid for 3 days by providing drinking water containing 0.05% MMI, 1% sodium perchlorate and 2% sucrose water starting on PND 12. On PND 15 all pups received i.p. injections of saline containing 2 µM NaOH (Control and hypothyroid); T4/T3 at 50 µg/5.0 µg/100 g B.W. (hyperthyroid); or T4/T3 at 25 µg/2.5 µg/100 g B.W. (hypothyroid/replacement). Pups were sacrificed by decapitation exactly 4 hrs post injection. Serum was collected from trunk blood and retained for T4 analysis. The cerebellum was rapidly dissected, frozen in liquid nitrogen and stored at −80°C.
Chromatin immunoprecipitation (ChIP) and DNA microarrays (chip)
ChIP was performed using EZ ChIP kits (Millipore Corporation, Danvers, MA) according to the manufacturer's instructions. Briefly, cerebellum from PND 15 mouse was homogenized, with a hand-held homogenizer, in PBS containing broad-spectrum protease inhibitors and was then cross-linked with 1% formaldehyde. Nuclei were collected by adding lysis buffer after cross-linkage was stopped with glycine. To ensure that DNA fragments ranged from 300 to 600 bp, the nuclear solution was sonicated, using a Fisher 60 Sonic Dismembranator (Thermo Fisher Scientific, Nepean, ON, Canada), in an ice bath with 5× 30 sec bursts at 12% power, each separated by 30 sec periods. Six percent (about 100 µl) of the sonicated solution was store at −20°C as TI, while the remainder was incubated with anti-TRβ polyclonal antibody (PA1-213, cloneTRb-62, Affinity Bioreagents, Golden, CO) overnight with agitation at 4°C (for ChIP-PCR, half of the remainder was incubated with anti-TRβ polyclonal antibody, the other half was incubated with normal rabbit IgG (Millipore Corporation, Danvers, MA)). Antibody-bound chromatin was precipitated with protein G conjugated agarose beads, washed with gradient stringent buffers, and eluted with elution buffer as per the manufacturer's instructions. The eluted solution, as well as the stored TI, was incubated at 65°C overnight to reverse cross-links. IP DNA and TI DNA were then purified by treatment with RNase, proteinase K and multiple phenol: chloroform: isoamyl alcohol (25∶24∶1) extractions. Equivalent amounts of IP DNA and TI DNA were amplified in parallel, using a random primer method with GenomePlex Complete Whole Genome Amplification Kit (Sigma-Aldrich, Oakville, ON, Canada), according to the manufacturer's instructions (15 cycles).
Genomic regions enriched by ChIP were identified using Agilent custom microarrays (Agilent Technologies, Mississauga, ON, Canada) containing representative sequences from 5000 mouse genes selected as potential TH-regulated candidates based on our previous studies ,  or from the literatures. The full list of genes is available upon request. The microarrays were prepared such that each array was composed of two slides of 44,000 spots each. Promoter oligo probes (50–60 mers) complementary to genomic sequences ranged from −8 kb upstream to 2 kb downstream of the TSS of each gene with 200 bp between adjacent probes.
Amplified IP or TI DNA samples (2 µg) was labelled with Cy5-dUTP or Cy3-dUTP (Perkin Elmer Life Sciences, Woodbridge, ON, Canada), respectively, using CGH kits (Invitrogen, Burlington, ON, Canada). Labelled DNAs (5 µg each) were hybridized with custom promoter microarrays for 40 hrs at 65°C, then washed and dried according to the manufacturer's instructions.
Hybridization images were obtained using an Agilent DNA microarray scanner and intensity data was extracted using Feature Extraction software (Agilent Technologies). Genomic regions enriched by ChIP were identified with a peak detection algorithm using Chip Analytics 1.3 software, according to the manufacturer's instructions (Agilent Technologies). Intensity data were normalized with blank subtraction followed by intra-array Lowess normalization, while the Whitehead Error Model v1.0 was used to calculate confidence values for each spot on each array. The Whitehead per-array neighbourhood model v1.0 was used to identify the bound regions. Criteria for identification of a positive probe were: 1) P-value for probe sets (probe and its two immediate neighbours) was less than 0.001; and 2) two of three probes in a probe set had a single probe P-value less than 0.005, or, the center probe in the probe set had a single probe P-value less than 0.001 and one of the flanking probes had a single P-value less than 0.1.
Primers targeting the enriched regions identified with ChIP-on-chip analysis were designed using BeaconDesigner 2.0 Software (Premier Biosoft, Palo Alto, CA). PCRs were performed using AmpliTaq (Perkin Elmer) with amplified TRβ-IP, IgG-IP or TI DNA pooled of 2 independent samples as templates. Primer sequences are indicated in Table S2.
Total RNA was extracted from cerebellum using Trizol, and reverse transcribed into cDNA using SuperScript III (Invitrogen). Quantitative PCR was performed with an iCycler IQ real-time detection system (Bio-Rad Laboratories, Mississauga, ON, Canada) using SYBR-Green. Primers were designed using Beacon Designer 2.0, and sequences can be found in Table S3. Gene expression levels were normalized to Hprt, which was found to be stable using the DNA microarray (data not shown). PCR efficiency was examined using the standard curve for each gene. The primer specificity was determined by the melting curve for each amplicon.
Reporter plasmid construction.
Mouse MAG luciferase reporter plasmids 1–3 were constructed by cloning PCR-derived fragments (MAG nucleotides +14 to −180,−280,−390) into the luciferase vector, PGL4.10 (Promega, Madisson, WI. USA). PCRs were performed using primers containing XhoI and BglII sites with mouse genomic DNA as template. PCR fragments were then subcloned into XhoI/BglII sites of pGL4.10 and the constructed sequences were confirmed by restriction enzyme mapping and sequencing.
Cell culture, transfection, and reporter assay.
Twenty-four hrs before transfection, GH3 cells (2×105) were seeded in each well of 6-well plates with F12 medium containing 10% dextran-coated charcoal-treated FBS. Each luciferase reporter plasmid construct (1.02 µg) was co-transfected with 0.03 µg of pRL-TK (Promega) into GH3 cells using 3 µl of FUGENE 6 (Agilent). Twenty four hrs post-transfection, T3 was added to a final concentration of 10−8 M. Cells were harvested 24 hrs after T3 addition, and then firefly and renilla luciferase activities were determined in cell lysates using a Veritas luminometer with the Dual-luciferase reporter assay system (Promega). Firefly luciferase activity was normalized to renilla luciferase activity to correct for transfection efficiency and the reporter gene expression presented as relative luciferase units (RLU). Each incubation was performed in duplicate and experiments were repeated 3 times.
Lysis buffer (200 µl) was added to 1×106 GH3 cells and 50 µg protein was loaded in each lane and separated on a 10% SDS-PAGE gels, then were transferred to nitrocellulose membranes at 100 V for 1 hr. Membranes were probed with anti-TRβ polyclonal antibody (Affinity Bioreagents; 3 µg/ml) overnight and HRP-conjugated goat anti-rabbit secondary antibody (Santa Cruz Biotechnology, CA; 1∶1000) for 2 hrs. Signals were detected using an ECL Plus kit (GE Healthcare Bio-Science Inc. Baie d'Urfe, QC, Canada).
ChIP PCR primers
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Gene expression PCR primers
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Serum T4 of mouse pups from in vivo TH modulation studies
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We thank Drs. Guillaume Pelletier and Kelly Jackson (all from Health Canada) for helpful comments on the manuscript.
Conceived and designed the experiments: HD CY TZ IL MGW. Performed the experiments: HD ARC SHY. Analyzed the data: HD MGW. Contributed reagents/materials/analysis tools: MGW. Wrote the paper: HD CY TZ MGW.
- 1. Bernal J (2007) Thyroid hormone receptors in brain development and function. Nat Clin Pract Endocrinol Metab 3: 249–259.J. Bernal2007Thyroid hormone receptors in brain development and function.Nat Clin Pract Endocrinol Metab3249259
- 2. Zoeller RT, Rovet J (2004) Timing of thyroid hormone action in the developing brain: clinical observations and experimental findings. J Neuroendocrinol 16: 809–818.RT ZoellerJ. Rovet2004Timing of thyroid hormone action in the developing brain: clinical observations and experimental findings.J Neuroendocrinol16809818
- 3. Delange F (1997) Neonatal screening for congenital hypothyroidism: results and perspectives. Horm Res 48: 51–61.F. Delange1997Neonatal screening for congenital hypothyroidism: results and perspectives.Horm Res485161
- 4. Harris KB, Pass KA (2007) Increase in congenital hypothyroidism in New York State and in the United States. Mol Genet Metab 91: 268–277.KB HarrisKA Pass2007Increase in congenital hypothyroidism in New York State and in the United States.Mol Genet Metab91268277
- 5. Alm J, Hagenfeldt L, Larsson A, Lundberg K (1984) Incidence of congenital hypothyroidism: retrospective study of neonatal laboratory screening versus clinical symptoms as indicators leading to diagnosis. Br Med J 289: 1171–1175.J. AlmL. HagenfeldtA. LarssonK. Lundberg1984Incidence of congenital hypothyroidism: retrospective study of neonatal laboratory screening versus clinical symptoms as indicators leading to diagnosis.Br Med J28911711175
- 6. Jacobsen BB, Brandt NJ (1981) Congenital hypothyroidism in Denmark: Incidence, types of thyroid disorders and age at onset of therapy in children: 1970–1975. Arch Dis Child 56: 134–136.BB JacobsenNJ Brandt1981Congenital hypothyroidism in Denmark: Incidence, types of thyroid disorders and age at onset of therapy in children: 1970–1975.Arch Dis Child56134136
- 7. Klein R (1980) History of congenital hypothyroidism. In: Burrow GN, Dussault JH, editors. Neonatal Thyroid Screening. New York: Raven Press. pp. 51–59.R. Klein1980History of congenital hypothyroidism.GN BurrowJH DussaultNeonatal Thyroid ScreeningNew YorkRaven Press5159
- 8. Klein RZ, Mitchell ML (1996) Neonatal Screening for Hypothyroidism. In: Braverman LE, Utiger RD, editors. The Thyroid: A Fundamental and Clinical Text. Seventh ed. Philadelphia: Lipponcott-Raven. pp. 984–988.RZ KleinML Mitchell1996Neonatal Screening for Hypothyroidism.LE BravermanRD UtigerThe Thyroid: A Fundamental and Clinical Text. Seventh edPhiladelphiaLipponcott-Raven984988
- 9. Blount BC, Pirkle JL, Osterloh JD, Valentin-Blasini L, Caldwell KL (2006) Urinary perchlorate and thyroid hormone levels in adolescent and adult men and women living in the United States. Environ Health Perspect 114: 1865–1871.BC BlountJL PirkleJD OsterlohL. Valentin-BlasiniKL Caldwell2006Urinary perchlorate and thyroid hormone levels in adolescent and adult men and women living in the United States.Environ Health Perspect11418651871
- 10. Brucker-Davis F (1998) Effects of environmental synthetic chemicals on thyroid function. Thyroid 8: 827–856.F. Brucker-Davis1998Effects of environmental synthetic chemicals on thyroid function.Thyroid8827856
- 11. Howdeshell KL (2002) A model of the development of the brain as a construct of the thyroid system. Environ Health Perspect 110: Suppl 3337–348.KL Howdeshell2002A model of the development of the brain as a construct of the thyroid system.Environ Health Perspect110Suppl 3337348
- 12. Zoeller RT (2007) Environmental chemicals impacting the thyroid: targets and consequences. Thyroid 17: 811–817.RT Zoeller2007Environmental chemicals impacting the thyroid: targets and consequences.Thyroid17811817
- 13. Bassett JH, Harvey CB, Williams GR (2003) Mechanisms of thyroid hormone receptor-specific nuclear and extra nuclear actions. Mol Cell Endocrinol 213: 1–11.JH BassettCB HarveyGR Williams2003Mechanisms of thyroid hormone receptor-specific nuclear and extra nuclear actions.Mol Cell Endocrinol213111
- 14. Bansal R, You SH, Herzig CT, Zoeller RT (2005) Maternal thyroid hormone increases HES expression in the fetal rat brain: An effect mimicked by exposure to a mixture of polychlorinated biphenyls (PCBs). Brain Res Dev Brain Res 156: 13–22.R. BansalSH YouCT HerzigRT Zoeller2005Maternal thyroid hormone increases HES expression in the fetal rat brain: An effect mimicked by exposure to a mixture of polychlorinated biphenyls (PCBs).Brain Res Dev Brain Res1561322
- 15. Auso E, Lavado-Autric R, Cuevas E, Escobar Del Rey F, Morreale De Escobar G, et al. (2004) A moderate and transient deficiency of maternal thyroid function at the beginning of fetal neocorticogenesis alters neuronal migration. Endocrinology 145: 4037–4047.E. AusoR. Lavado-AutricE. CuevasF. Escobar Del ReyG. Morreale De Escobar2004A moderate and transient deficiency of maternal thyroid function at the beginning of fetal neocorticogenesis alters neuronal migration.Endocrinology14540374047
- 16. Morte B, Manzano J, Scanlan T, Vennstrom B, Bernal J (2002) Deletion of the thyroid hormone receptor alpha 1 prevents the structural alterations of the cerebellum induced by hypothyroidism. Proc Natl Acad Sci U S A 99: 3985–3989.B. MorteJ. ManzanoT. ScanlanB. VennstromJ. Bernal2002Deletion of the thyroid hormone receptor alpha 1 prevents the structural alterations of the cerebellum induced by hypothyroidism.Proc Natl Acad Sci U S A9939853989
- 17. Nicholson JL, Altman J (1972) Synaptogenesis in the rat cerebellum: effects of early hypo- and hyperthyroidism. Science 176: 530–532.JL NicholsonJ. Altman1972Synaptogenesis in the rat cerebellum: effects of early hypo- and hyperthyroidism.Science176530532
- 18. Rami A, Rabie A (1990) Delayed synaptogenesis in the dentate gyrus of the thyroid-deficient developing rat. Dev Neurosci 12: 398–405.A. RamiA. Rabie1990Delayed synaptogenesis in the dentate gyrus of the thyroid-deficient developing rat.Dev Neurosci12398405
- 19. Dong H, Wade M, Williams A, Lee A, Douglas GR, et al. (2005) Molecular insight into the effects of hypothyroidism on the developing cerebellum. Biochem Biophys Res Commun 330: 1182–1193.H. DongM. WadeA. WilliamsA. LeeGR Douglas2005Molecular insight into the effects of hypothyroidism on the developing cerebellum.Biochem Biophys Res Commun33011821193
- 20. Xiao Q, Nikodem VM (1998) Apoptosis in the developing cerebellum of the thyroid hormone deficient rat. Front Biosci 3: A52–57.Q. XiaoVM Nikodem1998Apoptosis in the developing cerebellum of the thyroid hormone deficient rat.Front Biosci3A5257
- 21. Yen PM (2005) Thyroid hormone action: genomic and nongenomic actions of thyroid hormones. In: Braverman LE, Utiger RD, editors. The Thyroid: A Fundamental and Clinical Text. 9 ed. Philadelphia: Lippincott Williams & Wilkins. pp. 135–150.PM Yen2005Thyroid hormone action: genomic and nongenomic actions of thyroid hormones.LE BravermanRD UtigerThe Thyroid: A Fundamental and Clinical Text. 9 edPhiladelphiaLippincott Williams & Wilkins135150
- 22. Dowling AL, Martz GU, Leonard JL, Zoeller RT (2000) Acute changes in maternal thyroid hormone induce rapid and transient changes in gene expression in fetal rat brain. J Neurosci 20: 2255–2265.AL DowlingGU MartzJL LeonardRT Zoeller2000Acute changes in maternal thyroid hormone induce rapid and transient changes in gene expression in fetal rat brain.J Neurosci2022552265
- 23. Munoz A, Rodriguez-Pena A, Perez-Castillo A, Ferreiro B, Sutcliffe JG, et al. (1991) Effects of neonatal hypothyroidism on rat brain gene expression. Mol Endocrinol 5: 273–280.A. MunozA. Rodriguez-PenaA. Perez-CastilloB. FerreiroJG Sutcliffe1991Effects of neonatal hypothyroidism on rat brain gene expression.Mol Endocrinol5273280
- 24. Thompson CC (1996) Thyroid hormone-responsive genes in developing cerebellum include a novel synaptotagmin and a hairless homolog. J Neurosci 16: 7832–7840.CC Thompson1996Thyroid hormone-responsive genes in developing cerebellum include a novel synaptotagmin and a hairless homolog.J Neurosci1678327840
- 25. Sharlin DS, Bansal R, Zoeller RT (2006) Polychlorinated biphenyls exert selective effects on cellular composition of white matter in a manner inconsistent with thyroid hormone insufficiency. Endocrinology 147: 846–858.DS SharlinR. BansalRT Zoeller2006Polychlorinated biphenyls exert selective effects on cellular composition of white matter in a manner inconsistent with thyroid hormone insufficiency.Endocrinology147846858
- 26. Sharlin DS, Tighe D, Gilbert ME, Zoeller RT (2008) The balance between oligodendrocyte and astrocyte production in major white matter tracts is linearly related to serum total thyroxine. Endocrinology 149: 2527–2536.DS SharlinD. TigheME GilbertRT Zoeller2008The balance between oligodendrocyte and astrocyte production in major white matter tracts is linearly related to serum total thyroxine.Endocrinology14925272536
- 27. Anderson GW (2008) Thyroid hormone and cerebellar development. Cerebellum 7: 60–74.GW Anderson2008Thyroid hormone and cerebellar development.Cerebellum76074
- 28. Ahmed OM, El-Gareib AW, El-Bakry AM, Abd El-Tawab SM, Ahmed RG (2008) Thyroid hormones states and brain development interactions. Int J Dev Neurosci 26: 147–209.OM AhmedAW El-GareibAM El-BakrySM Abd El-TawabRG Ahmed2008Thyroid hormones states and brain development interactions.Int J Dev Neurosci26147209
- 29. Segall MA, French TA, Weiner N (1996) Effect of neonatal thyroid hormone alterations in CNS ethanol sensitivity in adult LS and SS mice. Alcohol 13: 559–567.MA SegallTA FrenchN. Weiner1996Effect of neonatal thyroid hormone alterations in CNS ethanol sensitivity in adult LS and SS mice.Alcohol13559567
- 30. Farsetti A, Mitsuhashi T, Desvergne B, Robbins J, Nikodem VM (1991) Molecular basis of thyroid hormone regulation of myelin basic protein gene expression in rodent brain. J Biol Chem 266: 23226–23232.A. FarsettiT. MitsuhashiB. DesvergneJ. RobbinsVM Nikodem1991Molecular basis of thyroid hormone regulation of myelin basic protein gene expression in rodent brain.J Biol Chem2662322623232
- 31. Kakizawa S, Yamasaki M, Watanabe M, Kano M (2000) Critical period for activity-dependent synapse elimination in developing cerebellum. J Neurosci 20: 4954–4961.S. KakizawaM. YamasakiM. WatanabeM. Kano2000Critical period for activity-dependent synapse elimination in developing cerebellum.J Neurosci2049544961
- 32. Farsetti A, Desvergne B, Hallenbeck P, Robbins J, Nikodem VM (1992) Characterization of myelin basic protein thyroid hormone response element and its function in the context of native and heterologous promoter. J Biol Chem 267: 15784–15788.A. FarsettiB. DesvergneP. HallenbeckJ. RobbinsVM Nikodem1992Characterization of myelin basic protein thyroid hormone response element and its function in the context of native and heterologous promoter.J Biol Chem2671578415788
- 33. Crofton KM (2008) Thyroid disrupting chemicals: mechanisms and mixtures. Int J Androl 31: 209–223.KM Crofton2008Thyroid disrupting chemicals: mechanisms and mixtures.Int J Androl31209223
- 34. Grima B, Zelenika D, Pessac B (1992) A novel transcript overlapping the myelin basic protein gene. J Neurochem 59: 2318–2323.B. GrimaD. ZelenikaB. Pessac1992A novel transcript overlapping the myelin basic protein gene.J Neurochem5923182323
- 35. Campagnoni AT, Pribyl TM, Campagnoni CW, Kampf K, Amur-Umarjee S, et al. (1993) Structure and developmental regulation of Golli-mbp, a 105-kilobase gene that encompasses the myelin basic protein gene and is expressed in cells in the oligodendrocyte lineage in the brain. J Biol Chem 268: 4930–4938.AT CampagnoniTM PribylCW CampagnoniK. KampfS. Amur-Umarjee1993Structure and developmental regulation of Golli-mbp, a 105-kilobase gene that encompasses the myelin basic protein gene and is expressed in cells in the oligodendrocyte lineage in the brain.J Biol Chem26849304938
- 36. Feng JM (2007) Minireview: expression and function of golli protein in immune system. Neurochem Res 32: 273–278.JM Feng2007Minireview: expression and function of golli protein in immune system.Neurochem Res32273278
- 37. Paez PM, Spreuer V, Handley V, Feng JM, Campagnoni C, et al. (2007) Increased expression of golli myelin basic proteins enhances calcium influx into oligodendroglial cells. J Neurosci 27: 12690–12699.PM PaezV. SpreuerV. HandleyJM FengC. Campagnoni2007Increased expression of golli myelin basic proteins enhances calcium influx into oligodendroglial cells.J Neurosci271269012699
- 38. Koenig JI (1989) Pituitary gland: neuropeptides, neurotransmitters and growth factors. Toxicol Pathol 17: 256–265.JI Koenig1989Pituitary gland: neuropeptides, neurotransmitters and growth factors.Toxicol Pathol17256265
- 39. Sap J, de Magistris L, Stunnenberg H, Vennstrom B (1990) A major thyroid hormone response element in the third intron of the rat growth hormone gene. Embo J 9: 887–896.J. SapL. de MagistrisH. StunnenbergB. Vennstrom1990A major thyroid hormone response element in the third intron of the rat growth hormone gene.Embo J9887896
- 40. Jackson-Hayes L, Song S, Lavrentyev EN, Jansen MS, Hillgartner FB, et al. (2003) A thyroid hormone response unit formed between the promoter and first intron of the carnitine palmitoyltransferase-Ialpha gene mediates the liver-specific induction by thyroid hormone. J Biol Chem 278: 7964–7972.L. Jackson-HayesS. SongEN LavrentyevMS JansenFB Hillgartner2003A thyroid hormone response unit formed between the promoter and first intron of the carnitine palmitoyltransferase-Ialpha gene mediates the liver-specific induction by thyroid hormone.J Biol Chem27879647972
- 41. Steketee K, Ziel-van der Made AC, van der Korput HA, Houtsmuller AB, Trapman J (2004) A bioinformatics-based functional analysis shows that the specifically androgen-regulated gene SARG contains an active direct repeat androgen response element in the first intron. J Mol Endocrinol 33: 477–491.K. SteketeeAC Ziel-van der MadeHA van der KorputAB HoutsmullerJ. Trapman2004A bioinformatics-based functional analysis shows that the specifically androgen-regulated gene SARG contains an active direct repeat androgen response element in the first intron.J Mol Endocrinol33477491
- 42. Ruike Y, Katsuma S, Hirasawa A, Tsujimoto G (2007) Glucocorticoid-induced alternative promoter usage for a novel 5′ variant of granzyme A. J Hum Genet 52: 172–178.Y. RuikeS. KatsumaA. HirasawaG. Tsujimoto2007Glucocorticoid-induced alternative promoter usage for a novel 5′ variant of granzyme A.J Hum Genet52172178
- 43. Bao BY, Ting HJ, Hsu JW, Lee YF (2008) Protective role of 1 alpha, 25-dihydroxyvitamin D3 against oxidative stress in nonmalignant human prostate epithelial cells. Int J Cancer 122: 2699–2706.BY BaoHJ TingJW HsuYF Lee2008Protective role of 1 alpha, 25-dihydroxyvitamin D3 against oxidative stress in nonmalignant human prostate epithelial cells.Int J Cancer12226992706
- 44. Helledie T, Grontved L, Jensen SS, Kiilerich P, Rietveld L, et al. (2002) The gene encoding the Acyl-CoA-binding protein is activated by peroxisome proliferator-activated receptor gamma through an intronic response element functionally conserved between humans and rodents. J Biol Chem 277: 26821–26830.T. HelledieL. GrontvedSS JensenP. KiilerichL. Rietveld2002The gene encoding the Acyl-CoA-binding protein is activated by peroxisome proliferator-activated receptor gamma through an intronic response element functionally conserved between humans and rodents.J Biol Chem2772682126830
- 45. Levy N, Tatomer D, Herber CB, Zhao X, Tang H, et al. (2008) Differential regulation of native estrogen receptor-regulatory elements by estradiol, tamoxifen, and raloxifene. Mol Endocrinol 22: 287–303.N. LevyD. TatomerCB HerberX. ZhaoH. Tang2008Differential regulation of native estrogen receptor-regulatory elements by estradiol, tamoxifen, and raloxifene.Mol Endocrinol22287303
- 46. Lin Z, Reierstad S, Huang CC, Bulun SE (2007) Novel estrogen receptor-alpha binding sites and estradiol target genes identified by chromatin immunoprecipitation cloning in breast cancer. Cancer Res 67: 5017–5024.Z. LinS. ReierstadCC HuangSE Bulun2007Novel estrogen receptor-alpha binding sites and estradiol target genes identified by chromatin immunoprecipitation cloning in breast cancer.Cancer Res6750175024
- 47. Lee TI, Jenner RG, Boyer LA, Guenther MG, Levine SS, et al. (2006) Control of developmental regulators by Polycomb in human embryonic stem cells. Cell 125: 301–313.TI LeeRG JennerLA BoyerMG GuentherSS Levine2006Control of developmental regulators by Polycomb in human embryonic stem cells.Cell125301313
- 48. Wang X, Ikeguchi Y, McCloskey DE, Nelson P, Pegg AE (2004) Spermine synthesis is required for normal viability, growth, and fertility in the mouse. J Biol Chem 279: 51370–51375.X. WangY. IkeguchiDE McCloskeyP. NelsonAE Pegg2004Spermine synthesis is required for normal viability, growth, and fertility in the mouse.J Biol Chem2795137051375
- 49. Nichols CG, Lopatin AN (1997) Inward rectifier potassium channels. Annu Rev Physiol 59: 171–191.CG NicholsAN Lopatin1997Inward rectifier potassium channels.Annu Rev Physiol59171191
- 50. Williams K (1997) Interactions of polyamines with ion channels. Biochem J 325 (Pt 2): 289–297.K. Williams1997Interactions of polyamines with ion channels.Biochem J325 (Pt 2)289297
- 51. Cason AL, Ikeguchi Y, Skinner C, Wood TC, Holden KR, et al. (2003) X-linked spermine synthase gene (SMS) defect: the first polyamine deficiency syndrome. Eur J Hum Genet 11: 937–944.AL CasonY. IkeguchiC. SkinnerTC WoodKR Holden2003X-linked spermine synthase gene (SMS) defect: the first polyamine deficiency syndrome.Eur J Hum Genet11937944
- 52. Porterfield SP, Hendrich CE (1993) The role of thyroid hormones in prenatal and neonatal neurological development–current perspectives. Endocr Rev 14: 94–106.SP PorterfieldCE Hendrich1993The role of thyroid hormones in prenatal and neonatal neurological development–current perspectives.Endocr Rev1494106
- 53. Boehm T, Spillantini MG, Sofroniew MV, Surani MA, Rabbitts TH (1991) Developmentally regulated and tissue specific expression of mRNAs encoding the two alternative forms of the LIM domain oncogene rhombotin: evidence for thymus expression. Oncogene 6: 695–703.T. BoehmMG SpillantiniMV SofroniewMA SuraniTH Rabbitts1991Developmentally regulated and tissue specific expression of mRNAs encoding the two alternative forms of the LIM domain oncogene rhombotin: evidence for thymus expression.Oncogene6695703
- 54. Foroni L, Boehm T, White L, Forster A, Sherrington P, et al. (1992) The rhombotin gene family encode related LIM-domain proteins whose differing expression suggests multiple roles in mouse development. J Mol Biol 226: 747–761.L. ForoniT. BoehmL. WhiteA. ForsterP. Sherrington1992The rhombotin gene family encode related LIM-domain proteins whose differing expression suggests multiple roles in mouse development.J Mol Biol226747761
- 55. Hinks GL, Shah B, French SJ, Campos LS, Staley K, et al. (1997) Expression of LIM protein genes Lmo1, Lmo2, and Lmo3 in adult mouse hippocampus and other forebrain regions: differential regulation by seizure activity. J Neurosci 17: 5549–5559.GL HinksB. ShahSJ FrenchLS CamposK. Staley1997Expression of LIM protein genes Lmo1, Lmo2, and Lmo3 in adult mouse hippocampus and other forebrain regions: differential regulation by seizure activity.J Neurosci1755495559
- 56. Geiduschek EP, Kassavetis GA (2001) The RNA polymerase III transcription apparatus. J Mol Biol 310: 1–26.EP GeiduschekGA Kassavetis2001The RNA polymerase III transcription apparatus.J Mol Biol310126
- 57. Yen PM, Feng X, Flamant F, Chen Y, Walker RL, et al. (2003) Effects of ligand and thyroid hormone receptor isoforms on hepatic gene expression profiles of thyroid hormone receptor knockout mice. EMBO Rep 4: 581–587.PM YenX. FengF. FlamantY. ChenRL Walker2003Effects of ligand and thyroid hormone receptor isoforms on hepatic gene expression profiles of thyroid hormone receptor knockout mice.EMBO Rep4581587
- 58. Quarles RH (2007) Myelin-associated glycoprotein (MAG): past, present and beyond. J Neurochem 100: 1431–1448.RH Quarles2007Myelin-associated glycoprotein (MAG): past, present and beyond.J Neurochem10014311448
- 59. Haas MJ, Mreyoud A, Fishman M, Mooradian AD (2004) Microarray analysis of thyroid hormone-induced changes in mRNA expression in the adult rat brain. Neurosci Lett 365: 14–18.MJ HaasA. MreyoudM. FishmanAD Mooradian2004Microarray analysis of thyroid hormone-induced changes in mRNA expression in the adult rat brain.Neurosci Lett3651418
- 60. Ibarrola N, Rodriguez-Pena A (1997) Hypothyroidism coordinately and transiently affects myelin protein gene expression in most rat brain regions during postnatal development. Brain Res 752: 285–293.N. IbarrolaA. Rodriguez-Pena1997Hypothyroidism coordinately and transiently affects myelin protein gene expression in most rat brain regions during postnatal development.Brain Res752285293
- 61. Rodriguez-Pena A, Ibarrola N, Iniguez MA, Munoz A, Bernal J (1993) Neonatal hypothyroidism affects the timely expression of myelin-associated glycoprotein in the rat brain. J Clin Invest 91: 812–818.A. Rodriguez-PenaN. IbarrolaMA IniguezA. MunozJ. Bernal1993Neonatal hypothyroidism affects the timely expression of myelin-associated glycoprotein in the rat brain.J Clin Invest91812818
- 62. Schug J (2008) Using TESS to predict transcription factor binding sites in DNA sequence. Curr Protoc Bioinformatics Chapter 2: Unit 2 6.J. Schug2008Using TESS to predict transcription factor binding sites in DNA sequence.Curr Protoc Bioinformatics Chapter2Unit 2 6
- 63. Dong H, Yauk CL, Williams A, Lee A, Douglas GR, et al. (2007) Hepatic gene expression changes in hypothyroid juvenile mice: characterization of a novel negative thyroid-responsive element. Endocrinology 148: 3932–3940.H. DongCL YaukA. WilliamsA. LeeGR Douglas2007Hepatic gene expression changes in hypothyroid juvenile mice: characterization of a novel negative thyroid-responsive element.Endocrinology14839323940