modules	gene_number	TF_gene_number	miRNA	TF
primary/modu-1-ps	542	39	"hsa-miR-1, hsa-miR-143, hsa-miR-145, hsa-miR-221, hsa-miR-222"	"AHR, CREM, DKK3, EGR1, ELF1, ETS2, ETV5, FOS, FOSB, FOXN3, GLI3, HDAC9, HLF, ID2, ID4, ILK, IRF6, KLF10, LMO4, MED21, MEF2C, MEIS1, MEIS2, MKX, NFIL3, NR3C1, NR4A3, PBX1, PGR, PRRX1, SIK1, TCEAL1, TCF21, TEAD1, TRIM22, TRIM29, TSHZ3, ZEB1, ZFP36L1"
primary/modu-1-ne	113	7	"hsa-miR-1, hsa-miR-143, hsa-miR-145, hsa-miR-221, hsa-miR-222"	"CREB3L1, EZH2, HMG20B, LASS4, NME2, SOX4, SPDEF"
primary/modu-2-ps	466	50	"hsa-miR-181c, hsa-miR-224, hsa-miR-24, hsa-miR-27a"	"AEBP1, AHR, BCL2, BHLHE41, CREM, DKK3, ELF1, ETS1, ETS2, ETV5, ETV6, GATA3, GLI3, HDAC9, HIF1A, HOXD10, ID1, ID2, ID3, ID4, IFI16, IRF6, IRF8, KLF10, KLF5, MECOM, MED21, MEF2C, MEIS1, MEIS2, MMP14, NFE2L2, NR3C1, PGR, PRRX1, RORB, SFRP1, SFRP2, SKIL, SMAD3, TCF4, TEAD1, TFCP2L1, TGIF1, TP63, TRIM22, TRIM29, YWHAH, ZEB1, ZFP36L1"
primary/modu-2-ne	92	8	"hsa-miR-181c, hsa-miR-224, hsa-miR-24, hsa-miR-27a"	"CREB3L4, HMG20B, HOXC5, HSF4, LASS4, SOX14, SPDEF, ZBTB16"
primary/modu-3-ps	233	6	"hsa-let-7a, hsa-let-7d, hsa-let-7f, hsa-let-7g, hsa-let-7i, hsa-miR-126, hsa-miR-195, hsa-miR-98"	"AHR, CAND1, CTNNB1, HIF1A, TOP2B, UBA3"
primary/modu-3-ne	6	0	"hsa-let-7a, hsa-let-7d, hsa-let-7f, hsa-let-7g, hsa-let-7i, hsa-miR-126, hsa-miR-195, hsa-miR-98"	
primary/modu-4-ps	350	26	"hsa-miR-146a, hsa-miR-150, hsa-miR-223"	"AHR, ARNTL2, BCL2, ETS1, ETS2, ETV6, GLI3, HCLS1, HIF1A, IFI16, IKZF3, IRF8, KLF5, NFAT5, NFKB1, PRRX1, REL, RUNX1, SFRP1, SP140, TCF4, TGFB1, TRIM22, YWHAH, ZEB2, ZFP36L1"
primary/modu-4-ne	38	5	"hsa-miR-146a, hsa-miR-150, hsa-miR-223"	"GTF3C1, NKX3-1, SLC26A3, SPDEF, ZBTB16"
primary/modu-5-ps	145	11	"hsa-miR-106b, hsa-miR-141, hsa-miR-19a, hsa-miR-19b, hsa-miR-200c, hsa-miR-92a, hsa-miR-93"	"CREB3L4, DLX1, DLX2, E2F5, EZH2, HNF1B, ONECUT2, RORC, SIX1, SOX4, SPDEF"
primary/modu-5-ne	622	47	"hsa-miR-106b, hsa-miR-141, hsa-miR-19a, hsa-miR-19b, hsa-miR-200c, hsa-miR-92a, hsa-miR-93"	"AEBP1, AHR, ARNTL2, BCL2, BHLHE40, CREM, DKK3, ELF1, EPAS1, ETS1, ETS2, ETV5, GLI3, HLF, ID4, IFI16, ILK, KLF10, LMO4, MEF2C, MEIS1, MEIS2, MKX, MMP14, NFAT5, NFIL3, NR3C1, NR4A3, PBX1, PGR, PRRX1, REL, SFRP1, SFRP2, SIK1, SMAD3, TCF21, TCF4, TEAD1, TRIM22, TRIM29, TRPS1, TSHZ3, YWHAH, ZEB1, ZEB2, ZFP36L1"
metastasis/modu-1-ps	81	2	"hsa-miR-17, hsa-miR-20a, hsa-miR-20b"	"ARID5B, ZNF83"
metastasis/modu-1-ne	15	0	"hsa-miR-17, hsa-miR-20a, hsa-miR-20b"	
metastasis/modu-2-ps	173	7	"hsa-miR-200a, hsa-miR-200b"	"CTNNB1, HDAC1, KDM5B, SMARCA5, TBL1XR1, TCF12, XRCC6"
metastasis/modu-2-ne	382	6	"hsa-miR-200a, hsa-miR-200b"	"NR0B2, NR1I3, POU6F2, RHOXF2, RHOXF2B, SLC26A3"
metastasis/modu-3-ps	115	5	"hsa-miR-15a, hsa-miR-26a, hsa-miR-29c"	"HDAC1, RB1, SMARCA5, TBL1XR1, XRCC6"
metastasis/modu-3-ne	123	0	"hsa-miR-15a, hsa-miR-26a, hsa-miR-29c"	
metastasis/modu-4-ps	92	4	"hsa-let-7a, hsa-let-7d, hsa-let-7e, hsa-let-7f, hsa-miR-98"	"HDAC1, RB1, XRCC6, ZNF207"
metastasis/modu-4-ne	138	2	"hsa-let-7a, hsa-let-7d, hsa-let-7e, hsa-let-7f, hsa-miR-98"	"ASCL4, POU6F2"
metastasis/modu-5-ps	86	3	"hsa-miR-107, hsa-miR-26b"	"RB1, XRCC6, ZNF207"
metastasis/modu-5-ne	182	3	"hsa-miR-107, hsa-miR-26b"	"ASCL4, POU6F2, SLC26A3"
normal/modu-1-ps	625	32	"hsa-let-7b, hsa-miR-194"	"AFF4, ATF6, BTAF1, CDK12, CNOT7, DACH1, EHF, ELK4, ELL2, FOXP1, GRHL2, GTF2I, GTF3C6, HIVEP1, IRF2, IRF6, KDM1A, KLF3, MED13, MED14, NFIB, NFXL1, SATB1, SEC14L2, SLC30A9, TAF7, TFDP2, TOP2B, TRIM24, UBA3, ZNF350, ZNF75D"
normal/modu-1-ne	81	6	"hsa-let-7b, hsa-miR-194"	"ASCL1, BMP2, ERG, MEG3, SP140, TGFB1"
normal/modu-2-ps	698	31	"hsa-miR-141, hsa-miR-200a, hsa-miR-200b, hsa-miR-200c"	"DACH1, E2F5, EHF, ELF5, ELK4, ELL2, FOXP1, GMNN, GRHL2, GTF3C6, HOXA9, HOXB13, IRF6, KDM1A, KLF3, KLF5, MECOM, MED14, MYB, NFIB, NKX3-1, PPARG, SATB1, SEC14L2, TFCP2L1, TFDP2, TP63, TRIM24, XBP1, ZNF350, ZNF75D"
normal/modu-2-ne	360	22	"hsa-miR-141, hsa-miR-200a, hsa-miR-200b, hsa-miR-200c"	"AEBP1, COL1A1, DKK3, ERG, HLF, ILK, KLF7, MEF2C, MEG3, MKX, MMP14, NR2F1, OSR2, SFRP1, SFRP2, TBX4, TCF21, TGFB1, TSHZ3, YWHAH, ZEB1, ZEB2"
normal/modu-3-ps	544	18	"hsa-miR-106a, hsa-miR-17, hsa-miR-18b, hsa-miR-19b, hsa-miR-20b"	"CD38, CREB3L4, CUX2, E2F5, ELK4, ELL2, GRHL2, GTF3C6, HOXB13, IRF6, LASS4, MED14, NKX3-1, SEC14L2, SPDEF, TBL1XR1, TRIM24, ZNF350"
normal/modu-3-ne	155	9	"hsa-miR-106a, hsa-miR-17, hsa-miR-18b, hsa-miR-19b, hsa-miR-20b"	"AEBP1, COL1A1, DKK3, MKX, NR2F1, OSR2, SFRP2, TCF21, TGFB1"
normal/modu-4-ps	305	15	"hsa-miR-143, hsa-miR-214, hsa-miR-221, hsa-miR-24, hsa-miR-27a"	"AEBP1, AHR, COL1A1, DKK3, HDAC9, HLF, MEF2C, MKX, OSR2, SFRP2, TBX4, TCF21, WNT5A, ZEB1, ZEB2"
normal/modu-4-ne	62	0	"hsa-miR-143, hsa-miR-214, hsa-miR-221, hsa-miR-24, hsa-miR-27a"	
normal/modu-5-ps	355	26	"hsa-let-7a, hsa-let-7c, hsa-let-7d, hsa-let-7e, hsa-let-7f, hsa-let-7g, hsa-miR-195, hsa-miR-224, hsa-miR-26b, hsa-miR-98"	"AHR, BCL2, BCLAF1, BTAF1, BTF3, DACH1, DMTF1, ETV6, HOXD10, ID2, IRF8, MECOM, MEIS2, NFAT5, NFIB, NFKB1, NFXL1, NR1D2, NR2C1, PGR, PRRX1, SKIL, TFDP2, TOP2B, UBA3, ZNF207"
normal/modu-5-ne	129	8	"hsa-let-7a, hsa-let-7c, hsa-let-7d, hsa-let-7e, hsa-let-7f, hsa-let-7g, hsa-miR-195, hsa-miR-224, hsa-miR-26b, hsa-miR-98"	"CITED1, EGR3, ESRRG, HMG20B, HSF4, SIM2, SOX14, TSC22D3"