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Rongrong Ding, Jianping Quan, Ming Yang, Xingwang Wang, Enqin Zheng, Huaqiang Yang, Disheng Fu, Yang Yang, Linxue Yang, Zicong Li, Dewu Liu, Gengyuan Cai, Zhenfang Wu, Jie Yang
Genome-wide association analysis reveals genetic loci and candidate genes for feeding behavior and eating efficiency in Duroc boars
www.plosone.org
www.plosone.org
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(1)Tj
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3.0728 0 Td
(6)Tj
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q
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Q
q
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0.9921 0 Td
(0.95)Tj
1.8708 0 Td
(\(MIND\))Tj
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0.9864 0 Td
(0.99)Tj
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(\(GENO\),)Tj
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2.7383 0 Td
(allele)Tj
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0 Tc
4.184 0 Td
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0.9921 0 Td
(0.01)Tj
1.8765 0 Td
(\(MAF\),)Tj
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3.2258 0 Td
[()]TJ
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0.771 0 Td
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-0.004 Tc
(10)Tj
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Q
q
1 j
1 J
0 w
7.4999 0 0 6.6659 512.844 425.6503 cm
BT
/F13 1 Tf
1 TL
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[()]TJ
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(6)Tj
ET
Q
q
1 j
1 J
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BT
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1 TL
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(the)Tj
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(sex)Tj
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(chromosome)Tj
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(and)Tj
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(unmapped)Tj
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2.2054 0 Td
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(set)Tj
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(of)Tj
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(35,791)Tj
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4.9039 0 Td
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(338)Tj
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(pigs)Tj
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(for)Tj
1.3833 0 Td
(the)Tj
1.4684 0 Td
(subsequent)Tj
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Q
q
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1 J
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11.9999 0 0 11.9999 200.0125 347.0173 cm
BT
/F0 1 Tf
1 TL
-0.0033 Tc
0 0 Td
(GWAS)Tj
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Q
q
1 j
1 J
0 w
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BT
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1 TL
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(association)Tj
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(analysis)Tj
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(is)Tj
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(a)Tj
0.6519 0 Td
(research)Tj
3.5603 0 Td
(method)Tj
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(to)Tj
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(determine)Tj
4.32 0 Td
(the)Tj
-36.1131 -1.2982 Td
(correlation)Tj
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(between)Tj
3.532 0 Td
(high-density)Tj
5.2384 0 Td
(genetic)Tj
3.067 0 Td
(markers)Tj
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(and)Tj
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(complex)Tj
3.6226 0 Td
(traits.)Tj
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1.7801 0 Td
(R)Tj
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(package)Tj
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(GenA-)Tj
-33.8171 -1.3039 Td
(BEL)Tj
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(was)Tj
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(perform)Tj
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(association)Tj
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(a)Tj
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(linear)Tj
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(16)Tj
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(,)Tj
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4.2576 0 Td
(17)Tj
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(identity-by-state[)Tj
0.83 0.64 0.02 0 k
(18)Tj
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(].)Tj
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1.7859 0 Td
(following)Tj
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(perform)Tj
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(GWAS:)Tj
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3.2881 0 Td
[( \n )90(\r )-6( )-4( )]TJ
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(,)Tj
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(where)Tj
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2.6475 0 Td
[()]TJ
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(the)Tj
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(the)Tj
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(year-season)Tj
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[(\r)]TJ
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1.4683 0 Td
(vector)Tj
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(measurement)Tj
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4.0592 0 Td
[()]TJ
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(is)Tj
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(the)Tj
1.4684 0 Td
(vector)Tj
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(SNP)Tj
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(effects;)Tj
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(the)Tj
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[()]TJ
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(~N\(0,)Tj
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(G)Tj
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[()]TJ
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q
1 j
1 J
0 w
7.4999 0 0 6.6659 290.0976 211.3511 cm
BT
/F15 1 Tf
1 TL
-0.0053 Tc
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()Tj
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0.5669 0.91 Td
(2)Tj
ET
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1 J
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BT
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1 TL
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(where)Tj
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(matrix)Tj
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(60K)Tj
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1.7348 0 Td
[()]TJ
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1 J
0 w
7.4999 0 0 6.6659 372.359 198.3118 cm
BT
/F15 1 Tf
1 TL
-0.0053 Tc
0 0 Td
()Tj
/F8 1 Tf
0.5669 0.9185 Td
(2)Tj
ET
Q
q
1 j
1 J
0 w
10 0 0 10 382.3937 200.0125 cm
BT
/F8 1 Tf
1 TL
-0.004 Tc
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(is)Tj
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(the)Tj
1.4683 0 Td
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[()]TJ
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(for)Tj
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Q
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[()]TJ
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ET
Q
q
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Q
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[()-3()1()20()11()9()]TJ
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(that)Tj
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(on)Tj
1.2756 0 Td
(the)Tj
1.4683 0 Td
(GO)Tj
1.6838 0 Td
(website)Tj
3.1805 0 Td
([)Tj
0.83 0.64 0.02 0 k
(http://geneontology.o)Tj
8.9971 0 Td
(rg/)Tj
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(24)Tj
0 g
(].)Tj
ET
Q
q
1 j
1 J
0 w
11.9999 0 0 11.9999 200.0125 330.0094 cm
BT
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1 TL
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0 -1.4976 Td
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(and)Tj
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(\(QC\))Tj
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BT
/F8 1 Tf
1 TL
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0.8957 0 Td
(summary)Tj
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(the)Tj
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(statistics)Tj
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(the)Tj
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(1)Tj
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(.)Tj
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(analysis,)Tj
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1.3152 0 Td
(assessed)Tj
3.4242 0 Td
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(of)Tj
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(all)Tj
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(by)Tj
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1.4514 0 Td
(Shapiro)Tj
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3.4072 0 Td
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1.3776 0 Td
(phenotypic)Tj
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(data)Tj
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(conformed)Tj
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(to)Tj
1.0148 0 Td
(the)Tj
1.4513 0 Td
(Gaussian)Tj
3.8211 0 Td
(distribution.)Tj
5.1137 0 Td
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4.0705 0 Td
(data,)Tj
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(18,792)Tj
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(1%\))Tj
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(frequencies,)Tj
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(489)Tj
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0 Tc
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(99%\))Tj
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1.5477 0 Td
(rate,)Tj
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(and)Tj
1.7121 0 Td
(840)Tj
1.627 0 Td
(markers)Tj
3.4583 0 Td
(not)Tj
1.5534 0 Td
(within)Tj
2.7779 0 Td
(Hardy-Weinberg)Tj
7.0129 0 Td
(equilibrium)Tj
4.8869 0 Td
(\(HWE\))Tj
3.1747 0 Td
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[()]TJ
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0 Tc
1.0942 0 Td
(<)Tj
/F8 1 Tf
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0.9921 0 Td
(10)Tj
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Q
q
1 j
1 J
0 w
7.4999 0 0 6.6659 492.3212 247.4645 cm
BT
/F13 1 Tf
1 TL
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[()]TJ
/F8 1 Tf
(6)Tj
ET
Q
q
1 j
1 J
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BT
/F8 1 Tf
1 TL
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2.0977 0 Td
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2.3188 0 Td
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(unknown)Tj
4.0365 0 Td
(chromo-)Tj
-34.0325 -1.2982 Td
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1.9106 0 Td
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(35,791)Tj
2.7893 0 Td
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(\(SSC14\))Tj
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(85.8)Tj
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1.2076 0 Td
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Q
q
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1 J
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BT
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1 TL
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4.7716 0 Td
(SNPs)Tj
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ET
Q
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1 TL
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(and)Tj
1.7291 0 Td
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1.474 0 Td
(QQ)Tj
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1.7064 0 Td
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1.7801 0 Td
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()Tj
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(TPV\))Tj
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(1.03)Tj
1.8708 0 Td
(\(DFI\),)Tj
2.7269 0 Td
(which)Tj
2.6532 0 Td
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3.3788 0 Td
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4.5921 0 Td
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ET
Q
q
1 j
1 J
0 w
576 737.1 m
36 737.1 l
36 737.6 l
576 737.6 l
f*
36 741.2598 107.1496 23.6976 re
W* n
q
107.0929 0 0 23.6409 36 741.3165 cm
q
/I0 Do
Q
Q
Q
q
0 0 612 792 re
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1 j
1 J
0 w
7.9999 0 0 7.9999 365.2724 745.7952 cm
BT
/F0 1 Tf
1 TL
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(GWA)Tj
2.5937 0 Td
(study)Tj
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(behavio)Tj
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(r)Tj
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(and)Tj
1.8567 0 Td
(eating)Tj
2.8913 0 Td
(efficiency)Tj
4.3158 0 Td
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ET
Q
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1 j
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36 48.0002 m
576 48.0002 l
576 47.5002 l
36 47.5002 l
f*
0.83 0.64 0.02 0 k
81.5811 34.9228 m
237.8835 34.9228 l
h
f*
0 g
7.9999 0 0 7.9999 36 36 cm
BT
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(PLOS)Tj
2.8559 0 Td
(ONE)Tj
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