Allele Workbench: Transcriptome Pipeline and Interactive Graphics for Allele-Specific Expression
(a) The table shows the variants for an AI transcript. The S:NYfMus column displays the ref:alt SNP coverage for library NYfMus, and the SpNYfMus column shows the corresponding p-values. There are three AI SNPs, where two are ref> alt and the other is alt <ref. (b) The table shows the replicate counts for a transcript. The “SNP Rep” column contains a p-value for any replicate that has significantly different counts from the other replicates.