Synergy: A Web Resource for Exploring Gene Regulation in Synechocystis sp. PCC6803
The figure plots the fraction of neighborhoods for regulatory genes (A) and DNA-binding genes (B) with at least one significantly enriched motif (q<0.05) against the q-value threshold for mapping motifs to the genome. The fractions are calculated from the total number of genes in the respective groups that have gene expression data (118 DNA-binding genes and 136 regulatory genes). Plots are shown for all motifs and the subset of central motifs as well as for the complete and subset co-expression networks with different CLR thresholds. P-values are given for each combination of parameters and indicate the probability of observing the reported fraction of enriched neighborhoods in randomized networks.