Construction and Analysis of High-Density Linkage Map Using High-Throughput Sequencing Data
Figure 3
Changes in linkage map quality as genotyping error increased.
The X-axis represents genotyping error. The Y-axis represents Spearman rank correlation coefficient between estimated map marker order and true marker location for A, B and C, singleton rates for D, E and F, estimated genetic map distances for G, H and I, respectively.“Integrated”, “Female”, and “Male” indicates integrated, female, or male linkage maps, respectively. JoinMap4.0 failed to construct linkage map due to its inefficiency in estimating linkage phases when the error rate exceeded about 14%.