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StochPy: A Comprehensive, User-Friendly Tool for Simulating Stochastic Biological Processes

Figure 1

StochPy simulation output.

An example of explicit simulation output of StochPy is shown in a table. It reports the number of molecules of each molecular species and the reaction propensities at each time point when a reaction occurs. The time differences between consecutive rows indicate waiting times between reaction events. In the last column, the waiting times for reaction 4, , are given and they correspond to the time period between consecutive instances of activity of reaction 4.

Figure 1

doi: https://doi.org/10.1371/journal.pone.0079345.g001