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SNP Design from 454 Sequencing of Podosphaera plantaginis Transcriptome Reveals a Genetically Diverse Pathogen Metapopulation with High Levels of Mixed-Genotype Infection

Figure 3

Genotyping result obtained for the locus “harma_c3117_1457” in the dataset of 380 samples (from 80 localities).

Single-allele infections are represented with filled circles (C and T genotypes) whereas probable mixed-allele infections are represented with triangles, crosses and stars. CCT and CTT allele combinations were considered respectively as C and T when considering “high level of co-infection” or conservatively as C and T, for analyses mentioned as “low level of co-infection”.

Figure 3