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PHYMYCO-DB: A Curated Database for Analyses of Fungal Diversity and Evolution

Figure 2

Visualisation of sequences deleted by the manual curation after alignment (ClustalX 2.1).

The sequences highlighted in blue illustrate examples of sequences removed from PHYMYCO-DB. The compromised nature can stem from erroneous sequencing (e.g. repeated gaps), wrong annotation (e.g. sequence corresponding to another clade), high numbers of undetermined nucleotides, homopolymers insertions, erroneous alignment or reverse complementary sequences and presence of long insertions and introns or presence of deletions.

Figure 2

doi: https://doi.org/10.1371/journal.pone.0043117.g002