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Treelength Optimization for Phylogeny Estimation

Figure 4

Missing branch rates of different methods on 100-taxon model conditions.

We report missing branch rates for BeeTLe-Affine in comparison to ML methods, SATé, and SATé-II (top chart) and in comparison to MP methods (middle chart). On model conditions marked with ‘*’, ML(MAFFT)'s missing branch rate significantly improved upon BeeTLe-Affine's (using one-tailed pairwise t-tests with Benjamini-Hochberg [57] correction for multiple tests, for each test, and ). On model conditions marked with ‘$’, BeeTLe-Affine's missing branch rate significantly improved upon MP(MAFFT)'s (using similar statistical tests). Averages and standard error bars are shown; for each reported value.

Figure 4

doi: https://doi.org/10.1371/journal.pone.0033104.g004