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CATCHprofiles: Clustering and Alignment Tool for ChIP Profiles

Figure 4

The orientation of the CTCF/H2A.Z pattern is correlated with the orientation of the CTCF binding motif.

(a) Of the eleven zincfingers in CTCF, only four are required for strong binding. The orientation of the binding with respect to the CTCF motif was determined by Renda et al [23]. (b) The dominant orientation of the CTCF/H2A.Z pattern with respect to the orientation of the underlying CTCF motif. (c) The CTCF motif as derived from motif detection in genome-wide CTCF peaks in the ChIP-seq dataset of Barski et al [6].

Figure 4