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Benchmarking and Analysis of Protein Docking Performance in Rosetta v3.2

Figure 6

Docking of the FNR-Fn ternary complex.

Plots of score vs. Lrmsd for local docking of the unbound structures in target 1EWY without (A) and with (B) the small molecule FAD bound to FNR (A), with high, medium, and acceptable accuracy decoys colored in brown, orange, and tan, respectively. (C) The second-lowest energy structure from docking using FAD with FNR (green), Fd (cyan), and the FAD molecule (magenta) superimposed on the crystal structure of the complex (gray).

Figure 6