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Benchmarking and Analysis of Protein Docking Performance in Rosetta v3.2

Figure 3

Examples of docking successes and failures.

Interface energy vs. I_rmsd scatter plots for representative cases of (A) a docking success, (B) RB-sampling failure, (C) BB-sampling failure, and (D) a discrimination failure. Standard docking run decoys are in gray, the ten lowest-energy decoys from refinement of the unbound conformers superimposed on the native complex are in green, and the ten lowest-energy decoys from refinement of the bound complex is in red.

Figure 3

doi: https://doi.org/10.1371/journal.pone.0022477.g003