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A Comprehensive Analysis of Gene Expression Changes Provoked by Bacterial and Fungal Infection in C. elegans

Figure 5

Selection of differentially-regulated transcripts.

Dot plots showing log10 transformed dcpm values for expression of transcripts in uninfected (x-axis) versus D. coniospora infected worms (y-axis). Transcripts identified as up-regulated by one or more methods are shown in black, the others are shown in grey. (A) transcripts defined as up-regulated if the log2 fold change is greater than the 97th percentile of all up-regulated transcripts; (B) transcripts defined as up-regulated by alternative approach 1 (see Methods); (C) transcripts defined as up-regulated by alternative approach 2 (see Methods); (D) transcripts only defined as up-regulated if the log2 fold change is greater than the 97th percentile of all up-regulated transcripts and not by either of the other methods; (E) transcripts only defined as up-regulated by alternative approach 1; (F) transcripts only defined as up-regulated by alternative approach 2.

Figure 5

doi: https://doi.org/10.1371/journal.pone.0019055.g005