About the Authors

Carine Makendi

Affiliations Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom, The London School of Hygiene and Tropical Medicine, London, United Kingdom

Andrew J. Page

Affiliation Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom

Brendan W. Wren

Affiliation The London School of Hygiene and Tropical Medicine, London, United Kingdom

Tu Le Thi Phuong

Affiliation The Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam

Simon Clare

Affiliation Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom

Christine Hale

Affiliation Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom

David Goulding

Affiliation Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom

Elizabeth J. Klemm

Affiliation Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom

Derek Pickard

Affiliation Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom

Chinyere Okoro

Affiliation The Department of Medicine, University of Cambridge, Cambridge, United Kingdom

Martin Hunt

Affiliation Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom

Corinne N. Thompson

Affiliations The Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam, Centre for Tropical Medicine, Oxford University, Oxford, United Kingdom

Nguyen Phu Huong Lan

Affiliation The Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam

Nhu Tran Do Hoang

Affiliation The Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam

Guy E. Thwaites

Affiliations The Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam, Centre for Tropical Medicine, Oxford University, Oxford, United Kingdom

Simon Le Hello

Affiliation Institut Pasteur, Unité des Bactéries Pathogènes Entériques, Paris, France

Anne Brisabois

Affiliation Université Paris-Est, ANSES, Laboratoire de Sécurité des Aliments, Maisons-Alfort, France

François-Xavier Weill

Affiliations Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom, Institut Pasteur, Unité des Bactéries Pathogènes Entériques, Paris, France

Stephen Baker

sbaker@oucru.org

Affiliations The London School of Hygiene and Tropical Medicine, London, United Kingdom, The Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam, Centre for Tropical Medicine, Oxford University, Oxford, United Kingdom

Gordon Dougan

Affiliations Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom, The Department of Medicine, University of Cambridge, Cambridge, United Kingdom

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: CM BWW FXW SB GD. Performed the experiments: CM AJP TLTP SC CH DG EJK DP CO MH CNT NPHL NTDH SLH AB. Analyzed the data: CM AJP TLTP SC CH DG EJK DP CO MH CNT SLH AB. Contributed reagents/materials/analysis tools: CM AJP TLTP SC CH DG EJK DP CO MH CNT NPHL NTDH GET SLH AB FXW SB. Wrote the paper: CM AJP BWW EJK DP CO SLH AB FXW SB GD.